head SRR2584863_1.fastq @SRR2584863.3 HWI-ST957:244:H73TDADXX:1:1101:9337:2248/1 ATCAACAACACGCGTTTATTGGTCTGGCTGATCACCGCCGCCAGGTTGGCGCAGACAAAGGTTTTACCGATTGACGGGCTAACCCCGGTCATCATCAACACATTGTTCTGCGCCTGCATCATCGCGAAGTGCAGGCTG + C@CFFFFFHHHGHIIJJJJJJIIJIIJJJIIJJJJJGGGGGBGHHHFFBEDDDBBDDDDDD:>CBCCC...
无论是使用conda install -c bioconda samtools 还是使用conda install -c "bioconda/label/cf201901" samtools 我发现,无论是用上面的那一种conda安装方法,在运行samtools的时候,都会报错,报错信息如下: samtools: error while loading shared libraries: libcrypto.so.1.0.0: cannot open shared object file: No ...
scaffold_1 2842 C 12 ,$,,...,...^I. CFGEGEGGCFF+ scaffold_1 2843 G 11 ,,...,... FDDDDCD?DD+ scaffold_1 2844 G 11 ,,...,... FA?AAAA<AA+ scaffold_1 2845 G 11 ,,...,... F656666166* scaffold_1 2846 A 11 ,,...,... (1.1111)11* scaffold_1 2847 A 11 ,,+9...
scaffold_1 2842 C 12 ,$,,...,...^I. CFGEGEGGCFF+ scaffold_1 2843 G 11 ,,...,... FDDDDCD?DD+ scaffold_1 2844 G 11 ,,...,... FA?AAAA<AA+ scaffold_1 2845 G 11 ,,...,... F656666166* scaffold_1 2846 A 11 ,,...,... (1.1111)11* scaffold_1 2847 A 11 ,,+9...
FFscaffold_12842C12,$,,...,...^I.CFGEGEGGCFF+scaffold_12843G11,,...,...FDDDDCD?DD+scaffold_12844G11,,...,...FA?AAAA<AA+scaffold_12845G11,,...,...F656666166*scaffold_12846A11,,...,...(1.1111)11*scaffold_12847A11,,+9acggtgaag.+9ACGGTGAAT.+9ACGGTGAAG.+9ACGGTGAAG,+9...
CFGEGEGGCFF+ scaffold_1 2843 G 11 ,,...,... FDDDDCD?DD+ scaffold_1 2844 G 11 ,,...,... FA?AAAA<AA+ scaffold_1 2845 G 11 ,,...,... F656666166* scaffold_1 2846 A 11 ,,...,... (1.1111)11* scaffold_1 2847 A 11 ,,+9acggtgaag.+9ACGGTGAAT.+9ACGGTGAAG.+9ACGGTG...
samtools是一个用于操作sam和bam文件的工具集合。 1. view view命令的主要功能是:将输入文件转换成输出文件,通常是将比对后的sam文件转换为bam文件,然后对bam文件进行各种操作,比如数据的排序(和提取(这些操作是对bam文件进行的,因而当输入为sam文件的时候,不能进行该操作)。
bam2bcf_indel.c bam_sample.c bam_sample.h bcftools.h bin.c bin.h call.h ccall.c cigar_state.h cols.c cols.h config.mk.in configure.ac consensus.c convert.c convert.h csq.c dbuf.h dist.c dist.h edlib.c edlib.h em.c extsort.c extsort...
scaffold_1 2842 C 12 ,$,,...,...^I. CFGEGEGGCFF+ scaffold_1 2843 G 11 ,,...,... FDDDDCD?DD+ scaffold_1 2844 G 11 ,,...,... FA?AAAA<AA+ scaffold_1 2845 G 11 ,,...,... F656666166 scaffold_1 ...
bam2bcf_iaux.o: bam2bcf_iaux.c $(htslib_hts_h) $(htslib_sam_h) $(htslib_khash_str2int_h) $(bcftools_h) $(bam2bcf_h) $(htslib_ksort_h) $(read_consensus_h) $(cigar_state_h) bam2bcf_edlib.o: bam2bcf_edlib.c $(htslib_hts_h) $(htslib_sam_h) $(htslib_khash_str2in...