rsem-simulate-reads reference_name estimated_model_file estimated_isoform_results theta0 N output_name [-q] reference_name:The name of RSEM references, which should be already generated byrsem-prepare-reference estimated_model_file:This file describes how the RNA-Seq reads will be sequenced given...
The first argument of rsem-simulate-reads, ../ref/mouse_ref, tells RSEM where the reference is. Then the second and third arguments, LPS_6h.stat/LPS_6h.model and LPS_6h.isoforms.results, provide the learned sequencing error model and estimated expression levels from real data. The next ...
In addition to the primary parameters of the model (e.g., abundances, fragment and read length distributions, and sequencing error model parameters), quality score information must be provided to simulate reads. For the purposes of the simulations in this paper, we used a first-order Markov ...
ngvector.1.gz /usr/share/man/man1/rsem-gff3-to-gtf.1.gz /usr/share/man/man1/rsem-plot-transcript-wiggles.1.gz /usr/share/man/man1/rsem-prepare-reference.1.gz /usr/share/man/man1/rsem-run-ebseq.1.gz /usr/share/man/man1/rsem-simulate-reads.1.gz /usr/share/perl5/rsem_perl_...
The first argument of rsem-simulate-reads, ../ref/mouse_ref, tells RSEM where the reference is. Then the second and third arguments, LPS_6h.stat/LPS_6h.model and LPS_6h.isoforms.results, provide the learned sequencing error model and estimated expression levels from real data. The next ...
rsem-simulate-reads reference_name estimated_model_file estimated_isoform_results theta0 N output_name [-q] reference_name:The name of RSEM references, which should be already generated byrsem-prepare-reference estimated_model_file:This file describes how the RNA-Seq reads will be sequenced given...