Name Last commit message Last commit date Latest commit hpages Rsamtools 2.23.1 Nov 27, 2024 21a5945·Nov 27, 2024 History 1,166 Commits .github/ISSUE_TEMPLATE R inst man src tests vignettes DESCRIPTION LICENSE NAMESPACE NEWS README.md ...
10X的bam文件中没有NM header, 我觉得应该是用nM标签对应的数字计算Edit distance。 代码如下(参考https://github.com/NKI-GCF/XenofilteR/blob/cf6165a22d64462d544e11a789299bbff904f1ca/R/XenofilteR.R#L205): Cigar.matrix=cigarOpTable(dat_cigar[,1])#这里dat_cigar[,1]是一列CIGAR STRINGInserts<-...
我正在使用 GitHub Actions 设置持续集成。先决条件之一 ( samtools) 是最容易安装的conda。使用已安装软件包的标准方法是激活相应的conda环境。我正在寻找一种激活conda环境的方法。常见的激活方法均失败,详情见下文。我当前的解决方法是添加到由 . 安装的PATH硬编码路径。但如果安装的软件包数量增加,这是不可维护的...
Hi, I am using bcftools view -R regions.bed input.vcf.gz to extract only those variants present in regions.bed. However, I get only those variants not present in regions.bed, so exactly the opposite. I really don't know what is going on... Any help? Thanks! Anna I noticed something...
代码如下(参考https://github.com/NKI-GCF/XenofilteR/blob/cf6165a22d64462d544e11a789299bbff904f1ca/R/XenofilteR.R#L205): Cigar.matrix=cigarOpTable(dat_cigar[,1])#这里dat_cigar[,1]是一列CIGAR STRINGInserts<-Cigar.matrix[,colnames(Cigar.matrix)=="I"]Clips<-Cigar.matrix[,colnames(Cigar....