2 changes: 1 addition & 1 deletion 2 contrib/roary_plots/roary_plots.ipynb Original file line numberDiff line numberDiff line change @@ -103,7 +103,7 @@ "# Set index (group name)\n", "roary.set_index('Gene', inplace=True)\n", "# Drop the other info columns\n", "roary.dro...
master bin contrib roary2svg roary_plots roary_files README.md roary.html roary_plots.ipynb roary_plots.py lib t .gitignore .travis.yml AUTHORS CHANGELOG.md Dockerfile GPL-LICENSE README.md deployment_process dist.ini install_dependencies.sh ...
参数: f: output directory e: create a multiFASTA alignment of core genes using PRANK n: fast core gene alignment with MAFFT, use with -e p: number of threads [1] v: verbose output to STDOUT r: create R plots, requires R and ggplot2 ...
[makeblastdb] -r create R plots, requires R and ggplot2 -s dont split paralogs -t INT translation table [11] -ap allow paralogs in core alignment -z dont delete intermediate files -v verbose output to STDOUT -w print version and exit -y add gene inference information to spreadsheet, ...
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