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Bug fix for strand based effective length for MXE fixed events Allow build to install more dependencies from conda Assets 3 rmats_turbo_v4_3_0.tar.gz 1.2 MB 2024-03-22T14:34:39Z Source code (zip) 2024-03-22T14:25:26Z Source code (tar.gz) 2024-03-22T14:25:26Z Footer...
Code README License rMATS turbo v4.2.0 About rMATS turbo is the C/Cython version of rMATS (refer tohttp://rnaseq-mats.sourceforge.net). The major difference between rMATS turbo and rMATS is speed and space usage. rMATS turbo is 100 times faster and the output file is 1000 times smaller...
rMATS turbo v4.1.2(GitHub) 0.1 简单介绍 rMATS是一款对RNA-Seq数据进行差异可变剪切分析的软件。其通过rMATS统计模型对不同样本(有生物学重复的)进行可变剪切事件的表达定量,然后以likelihood-ratio test计算P value来表示两组样品在IncLevel(Inclusion Level)水平上的差异(从公式上来看,IncLevel跟PSI的定义也是类似...
Issues97 Pull requests5 Actions Projects Security Insights More master BranchesTags 8branches3tags Go to file Code Clone HTTPSGitHub CLI Download ZIP rMATS turbo v4.1.2 About rMATS turbo is the C/Cython version of rMATS (refer tohttp://rnaseq-mats.sourceforge.net). The major difference betwee...
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官方网站:rnaseq-mats.sourceforge.net 操作手册:github.com/Xinglab/rmat 简书 可变剪切:jianshu.com/p/ecef1d9e5 ==注意⚠️== - 注意如果从fastq文件进行rmats分析,需要有STAR构建的索引 - hisat2的bam文件结果似乎并不能分析可变剪接,尝试了从fq文件开始分析,结果显示正常- 2024/09/10 更新:参考gith...
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python rmats.py --b1 /path/to/prep1.txt --gtf /path/to/the.gtf -t paired --readLength 50 --nthread 4 --od /path/to/output --tmp /path/to/tmp_output_prep_1 --task prep On machine 2 run the prep step with prep2.txt: python rmats.py --b1 /path/to/prep2.txt --gtf ...
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