Based on next-generation web technologies and high-throughput experimental data, we have developed Rice-Map, a novel genome browser for researchers to navigate, analyze and annotate rice genome interactively. Description More than one hundred annotation tracks (81 for japonica and 82 for indica) ...
ARTICLE doi:10.1038/nature11532 A map of rice genome variation reveals the origin of cultivated rice Xuehui Huang1*, Nori Kurata2*, Xinghua Wei3*, Zi-Xuan Wang1,2*, Ahong Wang1, Qiang Zhao1, Yan Zhao1, Kunyan Liu1, Hengyun Lu1, Wenjun Li1, Yunli Guo1, Yiqi Lu1, Congcong Zhou1...
Moreover, a comprehensive map of rice genome variation will facilitate genetic mapping of complex traits in rice. We recently collected diverse rice cultivars for sequencing, and carried out genome-wide association studies (GWAS) for many agronomic traits in cultivated rice21,22. Here we sequenced ...
b, Map and cloning sites of the CRISPR/Cas9 vector pRGEB32 used in genome editing (left); vectors with different gRNAs (right). c, Sequences of gRNAs designed using CRISPR-P 2.0. Purple letters indicate protospacer-adjacent motif sites (PAMs). d, A schematic diagram of co-transformation ...
Development of genome-wide DNA Polymorphism database for map-based cloning of rice genes. Plant Physial. 2004;135(3):1198–205. https://doi.org/10.1104/pp.103.038463. Article CAS Google Scholar Zhang Y, Zhang XJ, Chen X, Sun W, Li J. Genetic diversity and structure of tea plant in...
Several BPH resistance genes encoding immune receptors have been isolated via map-based cloning, to show the crucial role of a rice plant’s immunity to the insect. Physical barriers, such as callose deposition in sieve tubes, and the accumulation of cellulose, hemicellulose and lignin in cell ...
This lead onto a model of the spread and infilling of the map with wet rice, which provides an estimate of the potential atmospher- ic methane that came from flooded rice fields and how that amount increased over the course of the Holocene (Fuller et al. 2011b). While this has an ...
Additional studies to fine map the region of qGCR9 and to under- stand which factors are associated with increased GCR values are underway. Cloning the gene(s) underlying QTL for GCR and grain yield on chromosome 9 is the first step toward understanding how the gene(s) func- tions and is...
how to leverage genomics to produce enough food to feed an expanding global population. Scientists worldwide are investigating the genetic variation among domesticated rice species and their wild relatives with the aim of identifying loci that can be exploited to breed a new generation of sustainable...
The sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078–2079 (2009). Article PubMed PubMed Central Google Scholar McKenna, A. et al. The genome analysis toolkit: a mapreduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297–1303 (2010). ...