RiceMap module archives the process of Affymetrix probe sets mapping to different databases about rice, and aims to the genes represented by a microarray set by retrieving annotation information via the identifier or accession number of every database; RiceGO module indicates the association between ...
Here, we present RED (Rice Expression Database; http://expression.ic4r.org), an integrated database of rice gene expression profiles derived entirely from RNA-Seq data. RED features a comprehensive collection of 284 high-quality RNA-Seq experiments, integrates a large number of gene expression...
BEIJING, Nov. 2 (Xinhua) -- Chinese researchers have developed a knowledge base for molecular breeding of rice to facilitate the breeding of different rice varieties. With the development of genome sequencing technology, large amounts of genomic and phenotypic data have been accumulated in the fiel...
The Rice Annotation Project Database (RAP-DB, http://rapdb.dna.affrc.go.jp/) has been providing a comprehensive set of gene annotations for the genome sequence of rice, Oryza sativa (japonica group) cv. Nipponbare. Since the first release in 2005, RAP-DB has been updated several times ...
As a major food crop and model organism, rice has been mostly studied with the largest number of functionally characterized genes among all crops. We previously built the funRiceGenes database including ~ 2800 functionally characterized rice genes and
from stray hand-collected rice grains to husk-tempered ceramic sherds. On the basis of this growing rice database, we published a summary of the spread of rice in “11 thrusts” (Fuller et al.2010a). This lead onto a model of the spread and infilling of the map with wet rice, which...
Annotation Project; RPKM, reads per kilobase per million reads; S-RAB, Short-Read Assembly Browser; SNP, single nucleotide polymorphism; SSR, simple sequence repeat; SVG, Scalable Vector Graphics; UTR, untranslated region. Database contents Updated genome assembly Since the release of the Internatio...
The rice annotation project database (RAP-DB): 2008 update (2006) The rice annotation project database (rap-db): Hub for Oryza sativa ssp. japonica genome information. Nucleic Acids Research, 34, 741- 744. doi:10.1093/nar/gkj094Tanaka T, Antonio BA, Kikuchi S, Matsumoto T, Nagamura Y,...
Figure S2 Structural comparison of putative OsERF106-encoding transcripts between the Rice Annotation Project Database (RAP-DB, http://rapdb.dna.affrc.go.jp/) and the Michigan State University Rice Genome Annotation Project (MSU RGAP, http://rice.plantbiology.msu.edu/). The coding sequences...
(2022b). The primary metabolites in the root exudates were identified using the Metware database (Metware Biotechnology Co., Ltd., Wuhan, China) and quantified by multiple reaction monitoring of triple quadrupole mass spectrometry. Statistical Analysis SPSS 23.0 (SPSS Inc., Chicago, IL, USA) ...