class: HDF5 major: Pluginfordynamically loadedlibraryminor: Iteration failederror#003: H5PLpath.cinH5PL__path_table_iterate_process_path():line620: can'topendirectory: ~/local/Minconda/envs/scRNA/lib/hdf5/plugin class: HDF5 major: Pluginfordynamically loadedlibraryminor: Can'topendirectoryorfile...
$ R CMD config MAKE make $ make --version GNU Make 4.3 Trying a clean conda environment now. Installing R v4.0.3 and then installing all packages from within that. I would use conda but packages want me to downgrade R which then breaks other packages... Collaborator grimbough commented ...
BiocManager::install('grimbough/Rhdf5lib', ref = "ld-flags") on a CentOS cluster, within a Conda environment created using conda create --name r-env -c bioconda -c conda-forge r-base=4.0.2 r-renv=0.11.0 Note that in that environment, before I can run BiocManager::install() I also...
解决方法: 先用conda 在目标环境中安装hdf5 conda install -c anaconda hdf5 再直接 install.packages("hdf5r") 即可 注意要删除之前自己安装的hdf5,或者移除环境变量中其他的hdf5的binary最后编辑于 :2021.02.02 20:04:43 ©著作权归作者所有,转载或内容合作请联系作者 2人点赞 日记本 更多精彩内容,就在简书A...
Please check how you useCHECK_ZLIB()function. Even if I added argument --with-zlib=/home/wendao/miniconda3 during installing Rhdf5lib, the same error appeared again. I find that Conda has complete zlib library in its directory. Maybe you can try to use zlib in Conda directory rather than...
System Details Operating System = CentOS Linux release 7.9.2009 (Core) R = 4.2.0 The hdf5 version available through RPM is 1.8.12-13.el7, which is incompatible with hdf5r 1.3.5. Then, the following solution was used to compile hdf5 1.12...