cd path/to/resfinder/ mkdir results # Run with raw data (this command mounts the results to the local directory "results") docker run --rm -it -v $(pwd)/db_resfinder/:/usr/src/db_resfinder -v $(pwd)/results/:/usr/src/results resfinder -ifq /usr/src/tests/data/test_isolate_01_...
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1.安装好conda以及mamba 2.建立一个环境,命名为resfinder conda create -n resfinder 激活环境 source activate resfinder 开始安装 1.准备安装脚本,复制以下代码至一个txt文件中,保存后修改文件名为"install_resfinder.sh",代码修改自: resfinder/install_resfinder.sh at master · cadms/resfinder (github.com) 赋...
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#Clone codegit clone https://github.com/phac-nml/staramr.gitcdstaramr#Setup virtual environmentvirtualenv -p /path/to/python-bin .venvsource.venv/bin/activate#Install staramr. Use '-e' to update the install on code changes.pip install -e.#Now run `staramr`staramr ...
37 changes: 37 additions & 0 deletions 37 resfinder/4.1.11/README.md Original file line numberDiff line numberDiff line change @@ -0,0 +1,37 @@ # ResFinder 4.1.11 container Main tool : [ResFinder](https://bitbucket.org/genomicepidemiology/resfinder/src/master/) Additional tools: - km...
Commit History Commits on Aug 2, 2022 adds readme for resfinder 4.1.11 kapsakcjcommittedAug 2, 2022 fe1989c End of commit history for this fileFooter © 2024 GitHub, Inc. Footer navigation Terms Privacy Security Status Docs Contact Manage cookies Do not share my personal information ...