On average, metabolite nodes had significantly more edges than OTUs, which was expected given that metabolic pathways are often genomically shared among many organisms. Firmicutes had more q <0.2 inter-omic relationships than any other clade, suggesting a more central role in metabolite production (...
On average, metabolite nodes had significantly more edges than OTUs, which was expected given that metabolic pathways are often genomically shared among many organisms. Firmicutes had more q <0.2 inter-omic relationships than any other clade, suggesting a more central role in metabolite production (...
Each individual was assigned to one of two treatment classes (A or B) by either supervised or unsupervised randomization. The supervised randomization procedure was used to assign treatment class at random whilst constraining the assignment to ensure an equal number of individuals in each class. Supe...
The new matrix, MOLLI60, was used to predict pairwise orthology relationships, as well as homolog families among 24 Mollicute genomes. We show that this new matrix enables to better discriminate between true and false orthologs and improves the clustering of homologous proteins, with respect to ...
A growing number of studies have used stylized network models of communication to predict brain function from structure. Most have focused on a small set of models applied globally. Here, we compare a large number of models at both global and regional le
However, the assignment of evolutionarily conserved roles to GATA homologs requires a detailed framework of orthologous relationships. Although two distinct classes, GATA123 and GATA456, have been unambiguously recognized among deuterostome GATA genes, it has been difficult to resolve exact orthologous ...
Li et al. BMC Infectious Diseases (2017) 17:371 DOI 10.1186/s12879-017-2471-0 RESEARCH ARTICLE Open Access Pneumonia caused by extensive drug- resistant Acinetobacter baumannii among hospitalized patients: genetic relationships, risk factors and mortality Yu jun Li1,2, Chu zhi Pan3†, Chang ...
organisms usually grow. In particular, syntenic/non-syntenic genes among these species were analyzed in terms of their sequence identity/similarity, physical characteristics of the encoded products and functional relationships among them. Additionally, in order to find more general trends, we compared ...
They mainly prey on a high variety of marine sessile organisms, from algae to sponges, cnidarians, bryozoans and tuni- cates, and very often take up the chemical compounds of the food for their own defence. These "stolen" com- pounds have become of high interest for pharmacists in finding...
with over 800 species described so far7. Recent molecular evidence indicates that the Peritrichia is monophyletic. However, it is still difficult to determine relationships among/within families and genera of peritrichs because relatively few representatives have been sequenced in most of them. Moreove...