Reading KEGG annotation online: fail to download KEGG data... Error in download.KEGG.Path(species) : 'species' should be one of organisms listed in 'http://www.genome.jp/kegg/catalog/org_list.html'... In addition: Warning message: In utils::download.file(url, quiet = TRUE, method = ...
Annotation of NHP transcriptomes is limited and primarily based on homology to human annotations25. Here, we mapped the RNA-seq datasets to the corresponding species genomes, refined existing annotations and generated assembled transcriptomes, resulting in an average of 12,164 genes per species (Extend...
Gene ontology KEGG: Kyoto encyclopedia of genes and genomes References Frankish A, Diekhans M, Ferreira AM, Johnson R, Jungreis I, Loveland J, Mudge JM, Sisu C, Wright J, Armstrong J, et al. GENCODE reference annotation for the human and mouse genomes. Nucleic Acids Res. 2019;47(D...
The Strings Interactome,55 BioGrid,56 IntAct,57 the KEGG pathway and the DAVID functional annotation tool.58 Data analysis The entire database of GAD, Human Protein Atlas, HPA and UniGene was downloaded as comma separated value (csv) files and the Excel filtering tool was used to scan for ...