Reading KEGG annotation online: fail to download KEGG data... Error in download.KEGG.Path(species) : 'species' should be one of organisms listed in 'http://www.genome.jp/kegg/catalog/org_list.html'... In addition: Warning message: In utils::download.file(url, quiet = TRUE, method = ...
Annotation of NHP transcriptomes is limited and primarily based on homology to human annotations25. Here, we mapped the RNA-seq datasets to the corresponding species genomes, refined existing annotations and generated assembled transcriptomes, resulting in an average of 12,164 genes per species (Extend...
FSPP: Functional smORF-encoded peptides predictor; MILE: Microarray innovations in leukemia; GEO: Gene expression omnibus; BLAST: Basic local alignment search tool; UniProt: Universal protein resource; GTEx: Genotype-tissue expression; GO: Gene ontology; KEGG: Kyoto encyclopedia of genes and genomes...
To investigate if nORFs could be involved in a particular function inP. falciparum,enrichment analysis was performed on the GO terms and KEGG pathways on their parent reference genes, because they might affect the functions of existing genes. As shown in Fig.4, parent genes of the novel peptid...
3.2. Document Annotation Annotation of the proteomic-nutrition corpus by DNorm [14] and GNormPlus [15] identified the diseases and gene/proteins, respectively, most often mentioned in the nutrition-proteomic corpus (Figure 2A,B,Supplement SA,Section 4). Importantly, these algorithms perform both ta...