working with electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats, including Spike2, NeuroExplorer, AlphaOmega, Axon, Blackrock, Plexon, Tdt, and support for writing to a subset of these formats plus non-proprietary formats including HDF5....
IMO, it would be acceptable if this was about constructing a new PythonDatasetobject wrapping an existing HDF5 dataset. But the test failure looks like it allows actually creating a new HDF5 dataset object to succeed when previously it failed; presumably it creates a dataset which can't be wri...
asciitableis a third-party Python tool for reading text files. Installation instructions are on theasciitable website. asciitable can read and write text tables in a variety of formats. One nice thing about asciitable is that it will try to guess the format of your table so you can type ...
This module,hdf5.node, is intended to be a pure API for reading and writing HDF5 files. Graphical user interfaces or other layers should be implemented in separate modules. Unlike other languages that wrap hdf5 API's this interface takes advantage of the compatibility of V8 and HDF5. The resu...
Repository files navigation README LGPL-3.0 licensepyNeuroMLA single package in Python unifying scripts and modules for reading, writing, simulating and analysing NeuroML2/LEMS models.Builds on: libNeuroML & PyLEMS and wraps functionality from jNeuroML.Installation...
To install the NetCDF libraries and its Python package on debian/ubuntu: sudo apt-get install libhdf5-serial-dev libnetcdf-dev pip install netCDF4 In case you get "ValueError: did not find HDF5 headers" try: sudo su find / -name "libhdf5*.so*" # use what the above 'find' suggests...
xdi_files add some example XDI files Feb 22, 2024 .gitignore incorporate conversion_examples in docs and CONTRIBUTING description Jan 22, 2025 .readthedocs.yaml initialize python projects Feb 22, 2024 CHANGELOG.md initialize python projects
Reading HDF4 files is thus disabled in python 3. The package uses different third-party packages if they are installed. Otherwise the functions are disabled. For example, reading of special files needs netCDF4 for netcdf and pyhdf/h5py for HDF4/HDF5, resp. If the latter are not installed...
in the source directory. You should then be able to import lightcone_io in python. Installing elsewhere lightcone_io requires mpi4py and h5py with MPI support, which means that h5py must be built from source and linked to a libhdf5 which uses the same MPI installation as mpi4py. To ...