library(SeuratDisk) Convert("example_dir/example_ad.h5ad", ".h5seurat") # This creates a copy of this .h5ad object reformatted into .h5seurat inside the example_dir directory # This .d5seurat object can then be read in manually seuratObject <- LoadH5Seurat("example_dir/example_ad.h5S...
If the file is not in the current folder or in a folder on the MATLAB®path, then specify the full or relative path infilename. Example:"C:\myFolder\myFile.h5" Example:"myFolder\myFile.h5" Uniform resource locator (URL)(since R2024b) ...
reader.onload=function(e) { let img= document.createElement('img'); img.src=e.target.result; img.title= '点击移除图片'; img.className= 'img-box'; document.querySelector(pic_div).appendChild(img); img.addEventListener('click',function(){this.parentNode.removeChild(this); });if(offset<_th...
In matlab, one can use the following command to read h5 file data = h5read(filename,ds) data = h5read(filename,ds,start,count) data = h5read(filename,ds,start,count,stride) Further Description on the usage Ex. 1 data = h5read(filename,ds_name) reads all the data from the dataset...
If the file is not in the current folder or in a folder on the MATLAB®path, then specify the full or relative path infilename. Example:"C:\myFolder\myFile.h5" Example:"myFolder\myFile.h5" Uniform resource locator (URL)(since R2024b) ...
If the file is not in the current folder or in a folder on the MATLAB®path, then specify the full or relative path infilename. Example:"C:\myFolder\myFile.h5" Example:"myFolder\myFile.h5" Uniform resource locator (URL)(since R2024b) ...
(x) a=Read10X_h5( x ) a[1:4,1:4] library(stringr) (p=str_split(x,'_',simplify = T)[,2]) sce <- CreateSeuratObject( a ,project = p ) sce }) setwd('../') pro='integrated' # 如果是 28个10X的单细胞转录组样品,走下面的流程会很勉强 for (i in 1:length(sceList)) {...
h5read函数可以读取HDF5文件中的数据集(dataset)或者数据组(group)中的数据。 该函数的语法如下: 代码语言:txt 复制 data = h5read(filename, datasetname) 其中,filename是HDF5文件的路径和名称,datasetname是要读取的数据集或数据组的名称。函数将返回一个包含读取数据的数组data。 h5read函数的优势在于它可以...
发现并不是常规的一个样本由barcode, genes ,matrix 三个文件构成的数据形式,因为通常读取10x数据需要三个文件:barcodes.tsv, genes.tsv, matrix.mtx,而这个文章的数据是一个样本被整合成了一个H5文件。如下所示: 代码语言:javascript 代码运行次数:0
I am getting the following error while reading a .h5 file. Error in sparseMatrix(i = indices[] + 1, p = indptr[], x = as.numeric(x = counts[]), : 'p' must be a nondecreasing vector c(0, ...) In addition: Warning message: In sparseMatrix(...