The RCSB PDB Protein Comparison Tooldoi:10.7490/F1000RESEARCH.2104.1Andreas Prlić nullSpencer BlivenPeter W RosePhilippe YoukharibachePhilip E Bourne
The Protein Comparison Tool, accessible using Java Web Start (http://www.rcsb.org/pdb/workbench/workbench.do?action=menu), is a critical tool for relating and comparing different structures. It provides several turnkey methods for pairwise sequence and structure alignments. For example, Fig. 4 ...
RCSB PDB Github repository of the RCSB Protein Data Bank 137followers United States http://www.rcsb.org Repositories Type Language Sort rcsb-sequence-coordinatesPublic The RCSB PDB GraphQL service for amino/nucleic acid and identifier mapping
PDBx/mmCIF Protein Data Bank Exchange (PDBx) macromolecular Crystallographic Information Framework (mmCIF) Introduction The Research Collaboratory for Structural Bioinformatics (RCSB) Protein Data Bank (PDB) RCSB.org research-focused web portal1, 2, 3 provides open access to a rigorously validated, exp...
Another specialized RCSB.org data delivery resource is the Pairwise Structure Alignment tool that calculates alignments using different trusted methods and displays sequence alignments and superposed 3D visualization. Comparisons can be made for any protein in the PDB archive and/or structures in uploaded...
PyPDB A Python 3 toolkit for performing searches with the RCSB Protein Data Bank (PDB). This can be used to perform advanced searches for PDB IDs matching various criteria, as well as to look up information associated with specific PDB IDs. This tool allows standard operations that can be ...
内容提示: RCSB Protein Data Bank (PDB) Data Processing & Annotation Procedures Manual December 2005 Report RCSB-100 Research Collaboratory for Structural Bioinformatics The RCSB PDB is supported by funds from the National Science Foundation (NSF), the National Institute of General Medical Sciences (...
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RCSB Protein Data Bankweb-native molecular graphicsWorldwide Protein Data BankThe Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), funded by the US National Science Foundation, National Institutes of Health, and Department of Energy, has served structural biologists and ...
Summary: With the continuous growth of the RCSB Protein Data Bank (PDB), providing an up-to-date systematic structure comparison of all protein structures poses an ever growing challenge. Here, we present a comparison tool for calculating both 1D protein sequence and 3D protein structure ...