The RCSB PDB Protein Comparison Tooldoi:10.7490/F1000RESEARCH.2104.1Andreas Prlić nullSpencer BlivenPeter W RosePhilippe YoukharibachePhilip E Bourne
The Protein Comparison Tool, accessible using Java Web Start (http://www.rcsb.org/pdb/workbench/workbench.do?action=menu), is a critical tool for relating and comparing different structures. It provides several turnkey methods for pairwise sequence and structure alignments. For example, Fig. 4 ...
The Sequence Similarity Search service enables performant queries for protein, DNA, and RNA one-letter-code sequences in the PDB archive by employing the sequence comparison tool MMseqs2.34, 35 For each matching sequence, the service returns a unique identifier for the PDB polymer sequence, matchi...
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RCSB PDB Github repository of the RCSB Protein Data Bank 108followers United States http://www.rcsb.org Overview Repositories114 Projects Packages People3 More PinnedLoading py-rcsbsearchapipy-rcsbsearchapiPublic Python interface for the RCSB PDB search API....
内容提示: RCSB Protein Data Bank (PDB) Data Processing & Annotation Procedures Manual December 2005 Report RCSB-100 Research Collaboratory for Structural Bioinformatics The RCSB PDB is supported by funds from the National Science Foundation (NSF), the National Institute of General Medical Sciences (...
PyPDB A Python 3 toolkit for performing searches with the RCSB Protein Data Bank (PDB). This can be used to perform advanced searches for PDB IDs matching various criteria, as well as to look up information associated with specific PDB IDs. This tool allows standard operations that can be ...
Summary: With the continuous growth of the RCSB Protein Data Bank (PDB), providing an up-to-date systematic structure comparison of all protein structures poses an ever growing challenge. Here, we present a comparison tool for calculating both 1D protein sequence and 3D protein structure ...
⚠️Please note that while the specification and tools for the MMTF format are still available, up-to-date MMTF files for the PDB archive will not be produced anymore from July 2024. Users are strongly encouraged to migrate to theBinaryCIF format. Details on how to access BinaryCIF(BC...
RCSB Protein Data Bank - RCSB PDB - 1KDF Structure SummarySonnichsen, F.DDeluca, C.IDavies, P.LSykes, B.D