一旦绘图参数更改,调用新参数并将其传递给RCircos.Reset.Plot.Parameters()函数,同时将检查其他两个组件是否更新。 rcircos.params<- RCircos.Get.Plot.Parameters()rcircos.params$base.per.unit <-3000RCircos.Reset.Plot.Parameters(rcircos.params)RCircos.List.Plot.Parameters() 5用...
# [83] "RCircos.Reset.Plot.Ideogram" # [84] "RCircos.Reset.Plot.Parameters" # [85] "RCircos.Reset.Plot.Positions" # [86] "RCircos.Ribbon.Plot" # [87] "RCircos.Scatter.Plot" # [88] "RCircos.Set.Base.Plot.Positions" # [89] "RCircos.Set.Core.Components" # [90] ...
## Following are procedures to change RCircos plot parameters: ## params <- RCircos.Get.Plot.Parameters(); ## params$radius.len <- 2.0; ## params$base.per.unit <- 5000; ## RCircos.Reset.Plot.Parameters(params) ## ## Chromosome ideogram data were automatically modified. 可以看出一个ci...
The RCircos package provides a set of graphic functions which implement basic Circos2D track plot[1]for visualizing similarities and differences of genome structure and positional relationships between genomic intervals.The package is implemented with R graphics package that comes with R base ...
RCircos.Reset.Plot.Parameters to see how to modify the core components. #chr.exclude <- NULL; 设置不显示的染色体,如 c(1,3) #cyto.info <- UCSC.HG19.Human.CytoBandIdeogram; 设置染色体数据 #tracks.inside <- 10; 设置内部track 个数
>rcircos.params$line.color<-"purple"#默认黑色,我改成紫色>RCircos.Reset.Plot.Parameters(rcircos.params)>RCircos.List.Plot.Parameters()ParametersforcurrentRCircossession.Parametersininch:===radius.len:1.84chr.ideo.pos:1.94highlight.pos:2.09chr.name.pos:2.14plot.radius:2.64track.in.start:1.89track...
[49] "RCircos.Heatmap.Plot" [50] "RCircos.heatmapColors" [51] "RCircos.Highligh.Chromosome.Ideogram" [52] "RCircos.Histogram.Plot" [53] "RCircos.Ideogram.Tick.Plot" [54] "RCircos.Initialize.Plot.Parameters" [55] "RCircos.Label.Chromosome.Names" ...
Reset RCircos Plot ParametersHongen Zhang
Reset RCircos Ideogram Plot DataHongen Zhang
rcircos.position <- RCircos.Get.Plot.Positions(); RCircos.List.Plot.Parameters() rcircos.params <- RCircos.Get.Plot.Parameters(); rcircos.params$base.per.unit <- 3000; RCircos.Reset.Plot.Parameters(rcircos.params); RCircos.List.Plot.Parameters(); 4.1 Initialize Graphic Device @ RCircos...