# make list of population size versus time popsize <- extract.popsize(mcmc.out) # plot and compare with skyline plot sk <- skyline(tree.hiv) plot(sk, lwd=1, lty=3, show.years=TRUE, subst.rate=0.0023, present.year = 1997) lines(popsize, show.years=TRUE, subst.rate=0.0023, prese...
and several methods handlingincomplete distancematrices (NJ*, BIONJ*, MVR*, and the corresponding triangle method). Some functions callexternal applications (PhyML, Clustal, T-Coffee, Muscle)whose results are returned into R.
off() ### # Comparison of various countries # # Figure 3 # ### # To compare two countries # cn1 = 2 # select two countries or two values # cn2 = 5 # ival1 = colMeans(outCntr[[cn1]]$idata,na.rm = TRUE) # for country values # ival2 = colMeans(outCntr[[cn2]]$idata,na...
all.equal.DNAbin == Compare DNA Sets all.equal.phylo == Global Comparison of two Phylogenies alview == Print DNA or AA Sequence Alignement ape-package == Analyses of Phylogenetics and Evolution apetools == Tools to Explore Files as.alignment == Conversion Among DNA Sequence Internal Formats ...
Node permutations have mainly been used to compare two matrices (or networks) involving the same group of individuals, i.e. matrix correlations. In this case, the values entered in the cell of the matrices are (un)directed behaviours (e.g. grooming or playing). In contrast to the gambit...
all.equal.DNAbin == Compare DNA Sets all.equal.phylo == Global Comparison of two Phylogenies alview == Print DNA or AA Sequence Alignement ape-package == Analyses of Phylogenetics and Evolution apetools == Tools to Explore Files as.alignment == Conversion Among DNA Sequence Internal Formats...
It’s expected that dataCompareR will be used to compare data frames, but it can be used to compare any objects that can be coerced to data frames, such as data tables, tibbles or matrices. dataCompareR cannot compare data that is not tabular in format (nested JSON, irregular lists etc)...
“incidence_raw”): for each assemblage, input data for a reference sample consist of a species-by-sampling-unit matrix; each element in the raw matrix is 1 for a detection, and 0 otherwise. When there are N assemblages, input data consist of N lists of raw matrices, and each matrix ...
c2c: Compare Two Classifications or Clustering Solutions of Varying Structure M Lyons 被引量: 0发表: 2017年 Graphene on metallic surfaces: Problems and perspectives Here these classifications, with the focus on the specific features in the electronic structure in all cases, are considered on the ...
Compare Two Variances Oracle R Enterprise Wilcoxon Rank Sum and Signed Rank Tests Author(s) Oracle References Oracle R Enterprise Examples # Transparency layer function overloads of the stats package intersect(ls("package:OREstats"), ls("package:stats")) ORExml-package Oracle R Enterprise XML ...