QTL IciMapping is freely-available public software, capable of building high-density genetic linkage maps and mapping quantitative trait loci (QTL). The latest released version has the following new features compared with previous versions. (1) Dominant/recessive markers are considered in recombination...
QTL Ici Mapping is freely available public software capable of building high-density linkage maps and mapping quantitative trait loci(QTL) in biparental populations. Eight functionalities are integrated in this software package:(1) BIN: binning of redundant markers;(2) MAP: construction of linkage ...
QTL IciMapping: integrated software for genetic linkage map construction and quantitative trait locus mapping in biparental populations Crop J., 3 (2015), pp. 269-283 View PDFView articleGoogle Scholar [29] H. Li, J.-M. Ribaut, Z. Li, J. Wang Inclusive composite interval mapping (ICIM) ...
In order to identify environment-stable QTL, interactions between QTL and environments were performed by the Multi-Environment Trials (MET) functionality in QTL IciMapping software (V4.1) [30,31], at a walking step of 1 cM and with a LOD threshold of 2.5 as manual input. 2.5. Alignment...
The QTLs were mapped with the inclusive composite interval mapping method using the QTL IciMapping software version 4 (Li et al. 2007; Meng et al. 2015) with single-environment phenotypic values. QTLs were calculated using the ICIM-ADD mapping method, with mapping parameters of 1 cM step and...
Combined with this genetic map, a main-effect and epistatic QTL mapping were performed. At the same time, QTL IciMapping software was used to map the distribution of QTL loci on wheat chromosomes. The QTLs are named after “Q + trait name + processing time + chromosome”. The GCIM method...
Using the Biparental Populations (BIP) module of the inclusive composite interval mapping (ICIM) in the software QTL IciMapping 4.1 for QTL analysis, a total of 39 QTLs for kernel-related traits were found and mapped within nineteen marker intervals on 1A, 2A, 5A, 7A, 1B, 2B, 4B, 5B,...
S1). The QTL analysis was based on the arithmetic mean values from three replicates for each trait by the inclusive composite interval mapping (ICIM) method implemented in QTL IciMapping Ver.4.2 (http://www.isbreeding.net). The LOD score threshold for QTL identification was 2.5 for each ...
The BIN function of ICIMapping (version 4.2) (Cao et al. 2019) was used to remove redundant markers. The remaining SNP markers were used for genetic linkage map construction, and the BIP function was applied to QTL localization for traits related to tolerance to anaerobic germination at ...
QTL analysis was conducted by combined the genotype with phenotype of CSSLs and secondary separation population using QTL IciMapping57. Mapping standard was identified as LOD⩾2.5, because a QTL exists when LOD ⩾2.5. Putative genes in theqHD7.2region were predicted by referring to the Rice...