AttributeError: 'NoneType' object has no attribute 'columns' 解决方法参考: https://github.com/aertslab/scenicplus/issues/264 即, Removing the #filter = annot['Chromosome/scaffold name'].str.contains('CHR|GL|JH|MT') annot = annot[~filter] lines from the annotation dataframe preprocessing fixe...
an example QC Stats object Carroll T. Assessing ChIP-seq sample quality with ChIPQC. BioC 2014, Boston. 2014 http://www.bioconductor. org/help/course-materials/2014/BioC2014/Bioc... qcs 被引量: 0发表: 0年 affyQCReport: A Package to Generate QC Reports for Affymetrix Array Data Parman ...
qc_stats(object) Arguments qc.dir path to the FastQC result directory to scan. progressbar logical value. If TRUE, shows a progress bar. object an object of class qc_aggregate. ... other arguments.Value qc_aggregate() returns an object of class qc_aggregate which is a (tibble) data ...
1)Aggregate函数,Sample的基本统计;qc_stats()类似 qc <- qc_aggregate(qc.dir) head(qc,3) sample module status tot.seq seq.length pct.gc pct.dup<chr> <chr> <chr> <chr> <chr> <dbl> <dbl> 1 170197A-Ti-1.R1.clean.fq.gz Basic Statis~ PASS 364589~ 150 51. 18.0 2 170197A-Ti-...
1)Aggregate函数,Sample的基本统计;qc_stats()类似 qc <- qc_aggregate(qc.dir) head(qc,3) sample module status tot.seq seq.length pct.gc pct.dup <chr> <chr> <chr> <chr> <chr> <dbl> <dbl> 1 170197A-Ti-1.R1.clean.fq.gz Basic Statis~ PASS 364589~ 150 51. 18.0 2 170197A-Ti...
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-QC procedures, parameters used and results are detailed in the global attribute history. They can also be displayed in a table via the 'QC stats' button on the main panel. QC procedure details can be queried when clicking any cell from the table. ...
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1)Aggregate函数,Sample的基本统计;qc_stats()类似 qc <- qc_aggregate(qc.dir)head(qc,3)sample module status tot.seq seq.length pct.gc pct.dup<chr> <chr> <chr> <chr> <chr> <dbl> <dbl>1 170197A-Ti-1.R1.clean.fq.gz Basic Statis~ PASS 364589~ 150 51. 18.02 170197A-Ti-1.R1...
Incorporating a set of open source libraries developed under the ffmpeg project, the QCTools document offers metadata values derived from four evaluative filters:signalstats,cropdetect,psnr, andebur128. using qcli QCTools files can also be generated via the command line withqcli. After installing ...