例如,`load molecule.pdb`。 2.导航和旋转: -使用鼠标左键点击并拖动以旋转分子。 -使用鼠标中键或滚轮放大或缩小分子。 -使用鼠标右键点击并拖动以平移分子。 3.选择和高亮分子: - 使用命令`select`选择特定的原子。例如,`select protein, chain A`将选择名为“chain A”的蛋白质链。 - 使用命令`zoom`或...
Python Molecular Viewer 的使用方法非常简单。首先,导入所需的库: ```python from molecular_viewer import MolecularViewer ``` 然后,创建一个 MolecularViewer 对象: ```python viewer = MolecularViewer() ``` 接下来,使用 `load` 方法加载分子文件: ```python viewer.load("your_molecule_file.pdb") ``...
viewer可以有: 'ase.gui', 'gopenmol', 'vmd', 'rasmol', 'paraview', 'ngl', 'x3d' data可以显示3D数据,比如电荷密度。 建立结构 无论是分子还是周期性体系,都可以通过ASE构建。 分子 ASE有一个叫G2的数据库,里面有常见的分子。 from ase.collections import g2 print(g2.names) ''' #数据库里...
Molecule2dViewerMolecule3dViewerNglMoleculeViewerSpeckJsme Genomic data AlignmentChartNeedlePlotOncoPrintSequenceViewerVolcanoPlot Chromosome data CircosClustergramFornaContainerIdeogramIgvManhattanPlotPileup Third-Party Libraries Parallel Computing with Dash and DaskHoloViewsDash Bootstrap (Community Component)Dash Leafl...
If you try the above command, you probably expect the molecule structure view will be rotated a full circle in 20 steps in 1 second time period. However, PyMol will actually freeze the viewer for 1 second and display the structure once at the end. ...
在这个shaders子文件夹下创建molecule.fs文件: 在molecule.fs输入以下代码: #version 450 coreinvec3vertex_normal;invec2vertex_tex_coord;invec3vertex_position;invec3vertex_color;outvec4fragment_color;layout(location=4)uniformvec3light_color;layout(location=5)uniformvec3light_position;layout(location=6...
I don't see the PyMol viewer window displayed, maybe because of the expired evaluation license. Running PyMol in library mode is still useful. You can load your molecule structures and change viewing parameters to generate nice looking pictures, or create states and define frames to produce ...
fname=os.path.join(tempdir,'original.pdb')molecule=self.molecules.getvalue()xform=molecule.openState.xform xform.invert()# want original coordinateschimera.viewer.pdbWrite([molecule],xform,fname)# write out Modeller input filecount=self.count.get()refine=self.refine.get()fname=os.path.join...
查看 Dash app：https://dash-bio.plotly.host/dash-molecule3d查看 Dash app 的 Python 代码：https://github.com/plotly/dash-bio/blob/master/tests/dashbio_demos/app_molecule3d.py 用 Dash 3d 分子组分可视化的 DNA 螺旋 分析显微镜图像中的细胞 这个 Dash 应用程序是由 “scikit-image” 背后的主要开发...
Mosaic - (Repo, Home, Docs) Desktop-based single molecule analysis toolbox that automatically decodes multi-state nanopore data. (linux, windows, mac, gov) odemis - (Repo, Home) Desktop imaging workflow software for Delmic microscopes, supporting autofocus, coordinate history, and OME-TIFF and ...