4. cmd.find_pairs() 5. cmd.load() 6. cmd.create() 7. cmd.save() 8. cmd.delete() 9. cmd.get_chains() 10. cmd.select() 11. cmd.identify() 12. cmd.alter() 13. cmd.iterate() 14. cmd.extend() 写在前面:后面会根据学习情况不断更新文章~~ Pymol是操作像蛋白,RNA之类的大分子专...
hb = cmd.find_pairs(selection,selection,mode=mode,cutoff=cutoff,angle=angle)else: selection2 = selection2 +" & e. n+o"hb = cmd.find_pairs(selection,selection2,mode=mode,cutoff=cutoff,angle=angle)# sort the list for easier readinghb.sort(lambdax,y:(cmp(x[0][1],y[0][1])))forpa...
show cartoon, 1hsg cmd.spectrum("count", selection="1hsg", byres=1)# The following 6 lines:# 1. load ligand structure and rename it # 2. add hydrogen # 3. hide ligand display # 4. show ligand in sticks mode # 5. Set width of stick to 0.15 # 6. Set atom color: C-white;...
Making stereo pairsMeaning of get_view parametersViewing direction vectors (axes)Ray-traceable text labelsCGO label orientationDisplaying in ball-and-stick modeQ: I’ve tried several settings and commands but cannot figure out how to make a simpleball-and-stick representation of a molecule. Can ...
select_distances, cmd.find_pairs, cmd.get_raw_alignment ''' from chempy import cpv state, quiet = int(state), int(quiet) if state < 1: state = cmd.get_state() valid_names = cmd.get_names_of_type('object:measurement') if names == '': names = ' '.join(valid_names) else: fo...
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cmd.exp_path cmd.extend cmd.extendaa cmd.find_pairs cmd.get_atom_coords cmd.get_cifstr cmd.get_color_index cmd.get_color_indices cmd.get_color_tuple cmd.get_coords cmd.get_coordset cmd.get_fastastr cmd.get_frame cmd.get_legal_name cmd.get_model cmd.get_names cmd.get_names_of_type...