Summary: The PSIPRED protein structure prediction server allows users to submit a protein sequence, perform a prediction of their choice and receive the results of the prediction both textually via e-mail and graphically via the web. The user may select one of three prediction methods to apply ...
The PSIPRED protein structure prediction server allows users to submit a protein sequence, perform a prediction of their choice and receive the results of the prediction both textually via e-mail and graphically via the web. The user may select one of three prediction methods to apply to their...
The trRosetta (transform-restrained Rosetta) server is a web-based platform for fast and accurate protein structure prediction, powered by deep learning and Rosetta. With the input of a protein’s amino acid sequence, a deep neural network is first used to predict the inter-residue geometries, ...
predictionproteinsecondarystructureserverjpred NucleicAcidsResearch,20151doi:10.1093/nar/gkv332JPred4:aproteinsecondarystructurepredictionserverAlexeyDrozdetskiy,ChristianCole,JamesProcterandGeoffreyJ.Barton*DivisionofComputationalBiology,CollegeofLifeSciences,UniversityofDundee,Dundee,DD15EH,UKReceivedJanuary27,2015;Revi...
Kelley, L., Sternberg, M. Protein structure prediction on the Web: a case study using the Phyre server.Nat Protoc4, 363–371 (2009). https://doi.org/10.1038/nprot.2009.2 Download citation Published26 February 2009 Issue DateMarch 2009 ...
serverisavailableathttp://.igb.uci.edu/servers/psss.html.INTRODUCTIONKnowledgeofaprotein’sstructureprovidesinsightintohowitcaninteractwithotherproteins,DNA/RNA,andsmallmolecules.Itistheseinteractionswhichdefinetheprotein’sfunctionandbiologicalroleinanorganism.Thus,proteinstructureandstructuralfeaturepredictionisa...
The I-TASSER structure prediction server as well as its function annotation components COFACTOR and COACH have all been objectively evaluated in the CASP and CAMEO structure and function prediction challenges, in which these programs showed considerably higher performance when compared with other state-...
I-TASSER: Fully automated protein structure prediction in CASP8 The I-TASSER algorithm for 3D protein structure prediction was tested in CASP8, with the procedure fully automated in both the Server and Human sections. T... Yang,Zhang - 《Proteins Structure Function & Bioinformatics》 被引量: ...
The Robetta server (http://robetta.bakerlab.org) provides automated tools for protein structure prediction and analysis. For structure prediction, sequences submitted to the server are parsed into putative domains and structural models are generated using either comparative modeling or de novo structure...
Significant progress has been made in protein structure prediction in recent years. However, it remains challenging for AlphaFold2 and other deep learning-based methods to predict protein structure with single-sequence input. Here we introduce trRosettaX-Single, an automated algorithm for single-sequence...