We used the short-root (SHR) promoter, which is exclusively active in the stele, the central tissue of the root, and drives the expression of SHR14. The latter is a nucleus-localized transcription factor that moves from the stele, where it is synthesized, to the endodermis, a tissue ...
We evaluate the quality of the input protein structure by calculating the root-mean-square deviation (RMSD) of the native one and the input. Native protein structures (RMSD = 0) are retrieved from the PDB database at the highest resolutions. We compute the best-F1 scores (box plots) ...
If SD was not reported in studies, it was calculated by multiplying the reported SE of means by the square root of the sample size. Given the heterogeneity among the studies and application of meta-regression to identify factors contributing to this heterogeneity, other sets of data were also ...
Genome-Wide Direct Target Analysis Reveals a Role SHORT-ROOT in Root Vascular Patterning through Cytokinin Homeostasis. SHORT-ROOT (SHR) is a key regulator of root growth and development in Arabidopsis (Arabidopsis thaliana). Made in the stele, the SHR protein moves into an ... Cui,Hongchang,...
Arabidopsis ABCG14 is essential for the root-to-shoot translocation of cytokinin Cytokinins are phytohormones that induce cytokinesis and are essential for diverse developmental and physiological processes in plants. Cytokinins of the t... K Donghwi,K Joohyun,K Takatoshi,... - 《Proceedings of the...
An endomycorrhiza in which the fungal hyphae grow between and within the cells of the root cortex and connect with hyphae ramifying though the soil but which do not form a thick mantle on the surface of the root. Vesicular-arbuscular mycorrhizas and the mycorrhizas of orchids and of the Er...
Short or low quality contigs with partial gene prediction, including Loose hits: rgi main --input_sequence /path/to/nucleotide_input.fasta --output_file /path/to/output_file --input_type contig --local --low_quality --include_loose --clean Short or low quality contigs with partial gene pr...
First, starting from the existing values of their RNA counterparts (uracil beads in case of thymine, and ribose GS2 bead for deoxyribose GS2), σ parameters were optimized to provide possibly low root mean square deviation (RMSD) of protein Cα atoms after rigid body energy minimization of ...
but short distance does not necessarily mean similar features. This leads to the graph not having strict homophily. To capture this important feature, it is natural to utilize heterophily-based models. However, to the best of our knowledge, no heterophily-based GNNs have been used for modelin...
living things could have evolved using a set of protein folds different from that currently observed in nature; (2) the timeline of biological evolution so far is too short for all possible folds to be explored; and (3) the novel folds are incapable of carrying out functions required for li...