The ClusPro server (https://cluspro.org) is a widely used tool for protein-protein docking. The server provides a simple home page for basic use, requiring only two files in Protein Data Bank (PDB) format. However, ClusPro also offers a number of advanced options to modify the search; ...
Molecular Docking server helps you setup ligand & protein for molecular modeling & ligand docking using high-throughput virtual screening. It uses Autodock & Mopac for docking calculations.
Protein–protein docking is the computational prediction of protein complex structure given the individually solved component protein structures. It is an important means for understanding the physicochemical forces that underlie macromolecular interacti
SwarmDock and the Use of Normal Modes in Protein-Protein Docking Here is presented an investigation of the use of normal modes in protein-protein docking, both in theory and in practice. Upper limits of the ability of no... IH Moal,Paul A. Bates ⋆ - 《International Journal of ...
The HDOCK server ( http://hdock.phys.hust.edu.cn/ ) is a highly integrated suite of homology search, template-based modeling, structure prediction, macromolecular docking, biological information incorporation and job management for robust and fast protei
In protein docking we aim to find the structure of the complex formed when two proteins interact. Protein–protein interactions are crucial for cell function. Here we discuss the usage of DOCK/PIERR. In DOCK/PIERR, a uniformly discrete sampling of orientations of one protein with respect to th...
Molecular Docking server helps you setup ligand & protein for molecular modeling & ligand docking using high-throughput virtual screening. It uses Autodock & Mopac for docking calculations.
Protein docking software GRAMM-X and its web interface (http://vakser.bioinformatics.ku.edu/resources/gramm/grammx) extend the original GRAMM Fast Fourier Transformation methodology by employing smoothed potentials, refinement stage, and knowledge-based scoring. The web server frees users from complex ...
Protein-protein and protein-DNA/RNA interactions play a fundamental role in a variety of biological processes. Determining the complex structures of these interactions is valuable, in which molecular docking has played an important role. To automatically
Protein-docking is a molecular modeling problem which aims to predict, with computer science algorithms and techniques, the mutual orientation and position of two molecules forming a complex. From: Encyclopedia of Bioinformatics and Computational Biology, 2019 ...