atom_site = data.getObj('atom_site') i = {k:atom_site.getIndex(val) for k,val in [('atm', 'label_atom_id'), # atom name ('atype', 'type_symbol'), # atom chemical type ('res', 'label_comp_id'), # residue name (3-letter) #('chid', 'auth_asym_id'), # chain ID...
The human homolog/ortholog protein name and description according to UNIPROT is given. (+) denotes upregulation/activation/gain-of-function; (–) denotes downregulation/inactivation/loss-of-function;C. elegans,Caenorhabditis elegans;D. melanogaster,Drosophila melanogaster;D. rerio,Danio rerio;M. musculu...
It is the UniProt database. The UniProt database is known as a central hub for the collection of functional information on proteins with accurate, consistent and rich annotation. Information such as the amino acid sequence, protein name, description of the protein, taxonomic data and citation ...
coli outer membrane proteins missing from this dataset were searched for in UniProt with the terms “Escherichia coli (strain K12) [83333],”“outer membrane” AND reviewed: yes. Overlaps with the BOMP dataset were included automatically; others were checked manually using BLAST or HHPred (Sö...
Apolipoprotein E4 Protein 价格: ￥2800/支 产品详情:Cat.#:CSTD-P-1003 Size:50ug Protein Name: APOE 4 Uniprot No.: P02649 Expression System:E. Coli Compound Identity... 纯度:>90% by SDS-PAGE. 包装规格:50ug 用途:Research Grade 货号:CSTD-P-1003 品牌:Chemstan 产地:China 相关问题 半夏...
If you do not have a tool installed for folding protein structures, you can search for your protein by Uniprot ID in theAlphaFold database(https://alphafold.ebi.ac.uk/) without consuming resources for folding. Test on Your Own Dataset ...
of interactions, the UniProt ID number, the taxon (NCBI Taxonomy ID), the protein name or description and a link with more information about the protein. Clicking on the link ‘+info_prot’ a new window with more detailed information about the query protein is displayed, including links to ...
Essentially, the wild type residue is looked for within the amino acid sequence (as given by Uniprot). If a match is found, the position is marked as ‘‘mapped’’. If the algorithm fails to identify any protein name or is not able to map to the identified protein the mutation is ...
1b. MS2 spectra were converted to.ms2 format using the MSConvert application from the ProteoWizard software package (v.2.1)42. Peptide identification was performed using the database search algorithm ProLuCID43 against a reverse-decoyed protein sequence database (Uniprot Reference Proteome Mus ...
Rigorous annotation-based quality tests prune the tree to most informative 162 088 clusters. Every high-quality cluster is assigned a ProtoName that reflects the most significant annotations of its proteins. These annotations are dominated by GO terms, UniProt/Swiss-Prot keywords and InterPro. ...