导入复合物 复制表格 下载口袋,下载图片 2D相互作用: Protein-Ligand Interaction Profiler https://proteins.plus/ posview查看相互作用 点击ligiand 其他功能:预测活性口袋的位点 DoGSiteScorer Binding site detection 后期pymol的处理: 鼠标中键可以切换为selecting residues 重命名残基rename selection> label<residues...
Salentin,S. et al. PLIP: fully automated protein-ligand interaction profiler. Nucl. Acids Res. (1 July 2015) 43 (W1): W443-W447. doi: 10.1093/nar/gkv315 FAQ I try to run PLIP, but I'm getting an error message saying: ValueError: [...] is not a recognised Open Babel descriptor...
Here, we present the protein–ligand interaction profiler (PLIP), a novel web service for fully automated detection and visualization of relevant non-covalent protein–ligand contacts in 3D structures, freely available at projects.biotec.tu-dresden.de/plip-web. The input is either a Protein Data ...
1. PLIP: fully automated protein–ligand interaction profiler [J] . Melissa F. Adasme, Michael Schroeder, Sebastian Salentin, Nucleic acids research . 2015,第W1期 机译:PLIP:全自动蛋白质-配体相互作用分析仪 2. Gypsy moth pheromone-binding protein-ligand interactions: pH profiles and simulation...
49, Web Server issue Published online 5 May 2021https://doi.org/10.1093/nar/gkab294PLIP 2021: expanding the scope of the protein–ligandinteraction prof i ler to DNA and RNAMelissa F. Adasme 1,† , Katja L. Linnemann 1,† , Sarah Naomi Bolz 1,† , Florian Kaiser 2 ,Sebastian...
Salentin,S. et al. PLIP: fully automated protein-ligand interaction profiler. Nucl. Acids Res. (1 July 2015) 43 (W1): W443-W447. doi: 10.1093/nar/gkv315 FAQ I try to run PLIP, but I'm getting an error message saying: ValueError: [...] is not a recognised Open Babel descriptor...
Salentin,S. et al. PLIP: fully automated protein-ligand interaction profiler. Nucl. Acids Res. (1 July 2015) 43 (W1): W443-W447. doi: 10.1093/nar/gkv315 FAQ I try to run PLIP, but I'm getting an error message saying: ValueError: [...] is not a recognised Open Babel descriptor...
Protein-Ligand Interaction Profiler (PLIP) Analyze non-covalent protein-ligand interactions in 3D structures How to use PLIP 1. Clone the repository Open a new system terminal and clone this repository using git clone https://github.com/ssalentin/plip.git ~/pliptool 2. Run PLIP As a command...
Protein-Ligand Interaction Profiler (PLIP) Analyze noncovalent protein-ligand interactions in 3D structures with ease. Use CaseWeb ServerDockerSingularityPython Module "I want to analyze my protein-ligand complex!" ✔️ ✔️ 🟡 ❌ "I want to analyze a billion protein-ligand complexes!" ...
PLIP, the protein–ligand interaction profiler, detects and visualises these interactions and provides data in formats suitable for further processing. PLIP has proven very successful in applications ranging from the characterisation of docking experiments to the assessment of novel ligand–protein complexes...