还有一个beta-value矩阵,一样的格式,就不展示了。 snv 如果你使用的表型数据是突变数据,那就更简单了,这里还是以TCGA-BLCA的突变数据为例。 直接使用easyTCGA1行代码下载突变数据: library(easyTCGA) getsnvmaf("TCGA-BLCA") 药敏数据还是和上面一样的,把突变数据直接加载进来就可以进行计算了。 因为这里使用的...
principal components analysis. cor a logical value indicating whether the calculation should use the correlation matrix or the covariance matrix. (The correlation matrix can only be used if there are no constant variables.) scores a logical value indicating whether the score on each principal componen...
Pos:a position specifier for the text. If specified this overrides any adj value given. Values of 1, 2, 3 and 4, respectively indicate positions below, to the left of, above and to the right of the specified coordinates.,1表示下方,2表示左方,3表示上方,4表示右方。 Labels: a character v...
The prediction intervals are for a single observation at each case in newdata (or by default, the data used for the fit) with error variance(s) pred.var. This can be a multiple of res.var, the estimated value of σ^2: the default is to assume that future observations have the same ...
还有一个beta-value矩阵,一样的格式,就不展示了。 snv 如果你使用的表型数据是突变数据,那就更简单了,这里还是以TCGA-BLCA的突变数据为例。 直接使用easyTCGA1行代码下载突变数据: library(easyTCGA)getsnvmaf("TCGA-BLCA") 药敏数据还是和上面一样的,把突变数据直接加载进来就可以进行计算了。 因为这里使用的是...
Name-value arguments must appear after other arguments, but the order of the pairs does not matter. Before R2021a, use commas to separate each name and value, and enclose Name in quotes. Example: [ypred,yci] = predict(Mdl,Xnew,'Alpha',0.01,'Simultaneous',true) returns the confidence...
library(gaussplotR)## Load the sample data setdata(gaussplot_sample_data)## The raw data we'd like to use are in columns 1:3samp_dat<-gaussplot_sample_data[,1:3]### Example 1: Unconstrained elliptical ### This fits an unconstrained elliptical by defaultgauss_fit_ue<-fit_gaussian_...
Any help greatly appreciated, thanks in advance. I have averaged three GLMM models using themodel.avg()function within theMuMInpackage. I would now like to predict from this averaged model. However, when I callpredict()R seems to think I wantpredict.merMod()and hence throws a warni...
This study aims to evaluate the early predictive value for postoperative sepsis and 30-day mortality in liver transplant patients using sequential organ failure assessment (SOFA). A total of 96 liver transplant patients were enrolled into this study from February 2015 to June 2018. The general info...
Finally, we evaluated the prognostic value of the top RF predictors derived through this work in different cancer types from The Cancer Genome Atlas (TCGA) dataset. To this end, we applied the classifiers that were trained on the Liu data based on mutations within the four selected biological ...