Sci. USA 6676–6681 (2015). This study analyses multi-generational base-resolution methylomes of A. thaliana mutation accumulation lines and provides the first estimates of forward and backward epimutation rates. Pecinka, A., Abdelsamad, A. & Vu, G. T. H. Hidden genetic nature of ...
Of the genes expressed differentially between the European and African populations, six are known to be involved in the response to heat stress. These include the heat shock proteinHsc70-2, which showed 70-fold higher expression in European flies. A role forHsc70-2in ecological adaptation is s...
Main panel (a): heat map gives presence of each ARG family across the phylogenetic tree of the SGBs, color reflects the fraction of genomes in the SGB that contain the ARG family. The 363 ARG families detected in adult stool metagenomes based on our assembled catalogue are sorted (y-axis)...
Heatmaps represent the density of r2 across distance. (DOCX 8289 kb) Additional file 3: Figure S3. LD decay pattern along each chromosome and across each sub- species. (a) Summarized LD decay with distance for each chromosome and a genome-wide average for each of the two peanut sub-...
A spectrum of heat colors indicates different migration weights at the migration event Full size image Inbreeding levels Based on the linkage disequilibrium (LD) analysis, the extent of LD in both populations of WQL and EQL appeared consistently, but was quite different from the pattern in WSC. ...
Setauket USA: Applied Biostatistics Inc; 2000. Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics. 2000;155(2):945–59. CAS PubMed PubMed Central Google Scholar Evanno G, Regnaut S, Goudet J. Detecting the number of clusters ...
Buffy coats from 175 healthy donors were obtained from the Indiana Blood Center (Indianapolis, IN, USA). A signed written consent was obtained from each participant and the project was approved by the ethics committee at the CHU Sainte-Justine (protocol #4022). All individuals recruited in thi...
The R Function heatmap.2 (http://www.inside-r.org/packages/cran/gplots/docs/heatmap.2) was used to graph the segment mean LRR values and generate hierarchical cluster dendrograms using 257 CNVs for all animals. We then performed multidimensional scaling (MDS) and admixture analysis to determi...
The heatmap shows the phased haplotype for the 1000 Genomes data set (red derived allele and blue ancestral allele) and the genotype for the ancient genomes (red homozygous derived, purple heterozygous and blue homozygous ancestral). Full size image...
The heatmaps display the performance of Random Forest (RF), LightGBM, SVM, XGBoost, Multi-Layer Perceptron (MLP), and Decision Tree (DT) models. Each cell represents the value of a specific evaluation metric, including accuracy, balanced accuracy, F1 score, J-index, kappa, Matthew's ...