当使用S-plots从PLS-DA或OPLS-DA模型中筛选 p 值小于 0.05 的变量时,可以遵循以下的一些步骤: 1.建立模型: 首先,需要在适当的统计软件或编程环境(如 R、MATLAB 或 Python)中完成 PLS-DA 或 OPLS-DA 分析。 2.生成S-plot: 使用分析工具,基于已建立的模型生成 S-plot。该图展示了变量的协方差和相关性系数...
PLS-DA scores plots for (A) standard 1D CPMG spectra of serum, (B) NOESY spectra of serum, (C) BPP-LED spectra of serum, and (D) NOESY spectra of urine from normal group, hi...
例1. 不同品种代谢产物OPLS-DA loading plot1 image.png OPLS-DA loading plots for different mulberry cultivars The metabolites with loadings that were distant from the origin on the OPLS-DA-loading plots were inferred to make the greatest contribution to class separation. Organic acids, lipids, and...
UPLC-QTOFMS based metabolomics followed by stepwise partial least square-discriminant analysis (PLS-DA) explore the possible relation between the variation... (2016). UPLC-QTOFMS based metabolomics followed by stepwise partial least square- discriminant analysis (PLS-DA) explore the possible relation ...
OPLS-DA loading plots for different mulberry cultivars 该数据是通过液相色谱-高分辨率质谱(LC-HRMS)来研究年龄、体重指数(bmi)和性别对尿液中代谢物浓度的影响，是一个list具体包含：由于目的是识别给定数据集的特征，而不是建模预测未知数据的分类，在这里将所有数据均作为训练集构建模型。opls的计算...
但是，你可以使用 Origin 来绘制 PLS-DA 分析的结果。例如，如果你在 R、MATLAB 或其他软件中进行了 PLS-DA 分析，你可以将得到的数据（如得分、负荷、VIP 分数等）导出到 Origin 中，然后利用 Origin 强大的图形绘制功能来创建高质量的图表，如得分图（score plots）或负荷图（loading plots）。
PCA-DA (MarkerView) and PLS-DA (MetaboAnalyst) score plots of discriminant analysis. Group labels: P = 1 and 0, PB = 2 and 1, PM = 3 and 2, PMB = 4 and 3.Fabiola, G. ...
但是,你可以使用 Origin 来绘制 PLS-DA 分析的结果。例如,如果你在 R、MATLAB 或其他软件中进行了 PLS-DA 分析,你可以将得到的数据(如得分、负荷、VIP 分数等)导出到 Origin 中,然后利用 Origin 强大的图形绘制功能来创建高质量的图表,如得分图(score plots)或负荷图(loading plots)。
Some variables are highly correlated, hence my interest in trying PLS-DA. I can run the model and see some nice plots that make sense e.g. coefficient plots identify variables with high values that match what I would anticipate from domain knowledge. I would like to get out the predictions...
Furthermore, we advocate against the use of PLSDA score plots for inference of class differences.doi:10.1007/s11306-007-0099-6Johan A. WesterhuisHuub C. J. HoefslootSuzanne SmitDaniel J. VisFerdi A. van DorstenSpringer USMetabolomics