Below is the heatmap produced by Hclust2 on the MetaPhlAn2 abundance profiles of HMP and HMP1-phase2 samples (microbial species and samples are hierarchically clustered). Usage #!python usage: hclust2.py [-h] [-i [INPUT_FILE]] [-o [OUTPUT_FILE]] [--legend_file [LEGEND_FILE]] [-t...
sc.pl.dotplot(adata, markers, groupby='bulk_labels', dendrogram=True) Get DotPlot object for fine tuning .. plot:: :context: close-figs dp = sc.pl.dotplot(adata, markers, 'bulk_labels', return_fig=True) dp.add_totals().style(dot_edge_color='black', dot_edge_lw=0.5).show() Th...