1、先使用monocle2中的plot_psudotime_heatmap plot_pseudotime_heatmap(x_monocle[1:10,],cluster_rows = F) image.png 2、使用genSmoothCurves+pheatmap b<-genSmoothCurves(x_monocle[1:10,],new_data = pData(x)[,3,drop=F]) pheatmap(b[,order(pData(x_monocle)[,3])], color = colorRamp...
Hi, I am trying to use plot_pseudotime_heatmap to map the heatmap of our source, but it doesnt work in monocle. And there are no error and result. Someone said may be I need a raw data to as the cds-object. It doesnt work, too. Then I wa...
remove_empty_rows=TRUE,#去掉空行 row_names_side="left",#基因在左 pct_side="right", heatmap_legend_param=heatmap_legend_param) 三 添加注释 3.1 添加临床注释信息 pdata<-cli head(pdata) #对应患者pdata <- subset(pdata,pdata$sa...
# 读取CSV文件 df=pd.read_csv('phe.csv')# 打印前几行数据print(df.head())df=pd.DataFrame(df)# 使用 Seaborn 的heatmap绘制交叉表 cross_tab=pd.crosstab(df['celltype'],df['orig.ident'])sns.heatmap(cross_tab,annot=True,cmap="YlGnBu",fmt='g')plt.xlabel('Orig Ident')plt.ylabel('Cel...