The package is pretty cool. Thanks to Junjun. But T got an error when plotting heatmap with results from monocle2. Here is the message: df = plot_genes_branched_heatmap2(cds[c(indGene), ], branch_point = 1, num_clusters = 4, show_rownames = T, branch_labels = c("Mac_C1QA",...
PhanstielLab/plotgardenerPublic NotificationsYou must be signed in to change notification settings Fork28 Star309 Code Issues17 Pull requests1 Actions Projects Security Insights Additional navigation options Files 7a36b36 plotGG.R plotGenes.R
show_rownames = T) image.png plot_genes_branched_heatmap(mycds_sub_beam, branch_point = 1, num_clusters = 2, show_rownames = T) image.png plot_genes_branched_heatmap(mycds_sub_beam, branch_point = 1, num_clusters = 3, show_rownames = T) image.png...
head(rownames(cds)) #[1] "AL627309.1" "AP006222.2" "RP11-206L10.2" "RP11-206L10.9" "LINC00115" #[6] "NOC2L" plot_cells(cds, genes=c("AL627309.1", "NOC2L", "RP11-206L10.2", "LINC00115")) #当然也支持tSNEcds = reduce_dimension(cds, reduction_method="tSNE") plot_cells(cd...