与TFClass相比,Plant-TFClass具有两种额外的TF:(i)具有哺乳动物中不存在的DBD类型的TF;这是八个新类别(LEAFY、RWP-RK、AP2/EREBP、EIL、TCP、ALOG、SBP和B3)的情况,我们解释了这些新类别基于给定超类的组织方式。这些TF可能是从现有的DBD通过快速序列演化德诺沃进化而来,或者是从转座子蛋白质[13,14]中产生的。
These include FEMALE GAMETOPHYTE MYB for female gametophyte development, BONOBO for gamete progenitor cell specification, DUO POLLEN1 for sperm differentiation and members of the RWP-RK domain family for female gamete formation. These studies demonstrate that M. polymorpha is a powerful model to ...
Genome-wide identification and characterization analysis of RWP-RK family genes reveal their role in flowering time of Chrysanthemum lavandulifolium. BMC Plant Biol. 2023;23(1). Mistry J, Chuguransky S, Williams L, Qureshi M, Salazar Gustavo A, Sonnhammer ELL, et al. Pfam: the protein ...
Cheng et al.8reported that 33.2% of the genome was impacted by transposable elements. We surveyed V2 for protein domains related to transposon biology, retrieving 6,186 entries in 1,748 unique genes (Supplementary Table4b). Among the 96 that passed the expression threshold, high temperature (29...
In Arabidopsis thaliana, NLP7, another member of the RWP-RK family, is an early regulator of cellular response to nitrogen assimilation [47]. The unique expression of RWP-RK proteins (with FPKM value of 18.4) only in Ib indicate that these proteins may have a role in nitrogen regulation ...
Plant transformation remains a major bottleneck to the improvement of plant science, both on fundamental and practical levels. The recalcitrant nature of most commercial and minor crops to genetic transformation slows scientific progress for a large rang
Abscisic acid (ABA) plays a significant role in the regulation of many physiological processes of plants. It is often used in tissue culture systems to pro
GRAS transcription factors emerging regulator in plants growth, development, and multiple stresses. Mol Biol Rep. 2022;49(10):9673–85. PubMed CAS Google Scholar Tedeschi F, Rizzo P, Rutten T, Altschmied L, Bäumlein H. RWP-RK domain-containing transcription factors control cell ...
RWP-RK, RAV, Sigma 70-like, TCP, and WRKY transcription factors (Additional file6: Figure S5). Similar to other analyses, pre-inflorescence-inflorescence and inflorescence-inflorescence have the lowest and the highest number of regulated genes encoding transcription factors respectively. The majority ...
(Table1). Furthermore, two Cu specifically up-regulated genes, Esi0100_0085 and Esi0226_0031, contained the RWP-RK domain found in plant proteins involved in nitrogen-controlled development [30]. Finally, we recorded the transcriptional up-regulation of a gene coding for a protein containing a...