Results Promoter sequences were collected from the PlantProm database. Non-promoter sequences were collected from plant mRNA, rRNA, and tRNA of PlantGDB and plant miRNA of miRBase. Then, in order to validate the proposed algorithm, we applied a 5-fold cross validation test. Training data sets...
SOC1: SUPPRESSOR OF OVEREXPRESSION OF CO 1; FT: FLOWERING LOCUS T; FLC: FLOWERING LOCUS C; SPL15: SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 15; AGL15: AGAMOUS-LIKE 15; DOG1: DELAY OF GERMINATION 1. Source data are provided as a Source Data file. Full size image These results suggest that...
Transcriptional silencing of geminiviral promoter-driven transgenes following homologous virus infection. Mol. Plant Microbe Interact. 16, 429–438 (2003). CAS PubMed Google Scholar Yang, X. et al. Suppression of methylation-mediated transcriptional gene silencing by βC1-SAHH protein interaction ...
other environmental factors such as temperature, circadian, and nutrient status may also affect carotenoid accumulation (Dhami and Cazzonelli2020). A citrus phosphate starvation response factor CsPHL3 directly binds to theLCYB1promoter
BDL was placed under the control of the RPS5A promoter (RPS5A:bdl), supporting high-level expression in the embryo. The number of shared neighbors in the transgenic RPS5A:bdl expressing line was greater than that of the wild-type embryo, indicating an overall increase in the connectedness of...
promoter Table 1 Involvement of DNA methylation in the response of plants to infections caused by pathogenic fungi Full size table Non-coding RNA In addition to the role of protein-coding genes as key regulators of plant immunity, increasing evidence indicates the importance of non-coding RNAs ...
The SlFRK4 promoter is active only during late stages of pollen and anther development. Plant Sci , 2013 , 199-200: 61 -70 CrossRef PubMed Google Scholar [24] Stein O, Avin-Wittenberg T, Krahnert I, et al. Arabidopsis fructokinases are important for seed oil accumulation and vasc...
Genome-wide computational prediction and analysis of core promoter elements across plant monocots and dicots PLoS One, 8 (2013), 10.1371/journal.pone.0079011 Google Scholar [78] C. Morey, S. Mookherjee, G. Rajasekaran, M. Bansal DNA free energy-based promoter prediction and comparative analysi...
Different types of cis-acting elements on the promoter reveal the potential functions and regulatory differences of genes. We found that the VviBG promoters contained many elements related to stress and hormone responses (Fig. 5). STRE responds to various stress conditions including heat, high osmot...
& Ware, D. Genome-wide computational prediction and analysis of core promoter elements across plant monocots and dicots. PLoS ONE 8, e79011 (2013). Article CAS PubMed PubMed Central Google Scholar Morton, T. et al. Paired-end analysis of transcription start sites in Arabidopsis reveals ...