tree = phytree Description tree = phytree(B) creates an ultrametric phylogenetic tree object. In an ultrametric phylogenetic tree object, all leaves are the same distance from the root. example tree = phytree(B,D) creates an additive (ultrametric or nonultrametric) phylogenetic tree object with...
Tree2 = subtree(Tree1, Nodes) extracts a new subtree (Tree2) where the new root is the first common ancestor of the Nodes vector from Tree1. Nodes in the tree are indexed as [1:NUMLEAVES] for the leaves and as [NUMLEAVES+1:NUMLEAVES+NUMBRANCHES] for the branches. Nodes can also ...
Syntax Tree = phytree(B) Tree = phytree(B, D) Tree = phytree(B, C) Tree = phytree(BC) Tree = phytree(..., N) Tree = phytreeArguments B Numeric array of size [NUMBRANCHES X 2] in which every row represents a branch of the tree. It contains two pointers to the branch or...
T1 Phylogenetic object created with the phytree constructor function. Nodes Nodes to remove from tree. Mode Property to control the method of pruning. Enter either 'Inclusive' or 'Exclusive'. The default value is 'Inclusive'.Description T2 = prune(T1, Nodes)removes the nodes listed in the vec...
Tree = phytreeread(File) Tree = phytreeread(File,'TimeOut',TimeOutValue) [Tree, Boot]= phytreeread(File)Input Arguments File Character vector or string specifying a Newick- or Nexus-formatted tree file (ASCII text file) name, a path and file name, or a URL pointing to a file. For...
phytreewrite(Tree)opens the Save Phylogenetic Tree As dialog box for you to enter or select a file name. phytreewrite(..., 'PropertyName',PropertyValue, ...)callsphytreewritewith optional properties that use property name/property value pairs. You can specify one or more properties in any...
phytreeviewer opens the Phylogenetic Tree app that allows you to view, edit, and explore phylogenetic tree data. phytreeviewer(Tree) loads a phytree object Tree into the app. phytreeviewer(File) loads data from a Newick or ClustalW tree formatted file into the app. exampleInput...
from phytreeviz import TreeViz, load_example_tree_file tree_file = load_example_tree_file("small_example.nwk") tv = TreeViz(tree_file) tv.show_branch_length(color="red") tv.show_confidence(color="blue") tv.show_scale_bar() tv.savefig("api_example01.png", dpi=300) API Example 2...
Hi, I have been using iMX Config Tools to identify GPIO compatibility, but do not see NAND_TREE# listed with the other ethernet signals. Are there any restrictions with this signal? Devices: iMX8ULP KSZ8081RNB I appreciate your support!Best Regards,kharding Labels: i.MX8ULP 0 Kudos ...
| [phyTreeViz](https://hub.docker.com/r/staphb/phytreeviz) [](https://hub.docker.com/r/staphb/phytreeviz) | [0.1.0](phytreeviz/0.1.0/) | https://github.com/moshi4/phyTreeViz/ | | [Piggy](https://hub...