git clone https://github.com/fpozoc/hp-pfamscan.git cd HP-PfamScan conda env create --file environment.yml conda activate pfamscan In case the user does not choose Conda as the desired environment, this instructions described here can be followed. Disclaimer: Pfam-B has not been uploaded ...
一、 安装 使用conda安装Pfam_scan $ conda create-n pfam_scan##可新建一个环境,用于安装pfam-scan$ source activate pfam_scan $ conda install pfam_scan pfam_scan依赖bioperl,因此,通过conda安装简单快捷. 安装hmmer3 , 使用以下命令安装: $ wget http://eddylab.org/software/hmmer/hmmer-3.2.tar.gz $...
1.PfamScan软件安装 #这里推荐使用conda 安装 conda create -n pfam_scan python=3.7 #创建一个conda环境用于安装pfam_scam conda install -c bioconda pfam_scan hmmer hmmer2 -y #安装必要的软件 #or download from ftp://ftp.ebi.ac.uk/pub/databases/Pfam/Tools/;#可选方案,从官网下载安装,依赖bioperl...
#安装pfam_scan conda create -n pfam_scan #创建虚拟环境 source activate pfam_scan conda install pfam_scan #安装hmmer3 wget http://eddylab.org/software/hmmer/hmmer-3.2.tar.gz tar -xzvf hmmer-3.2.1.tar.gz cd hmmer-3.2 ./configure make make check make install vim ~/.bashrc#添加环境变量 ...