idfile ../Nr/Bacteria.list -destfile protein.links.v11.0.change.txt -out Bacteria.links.v11.0.txt & perl data_extract_by_ids.pl -idfile ../Nr/Eukaryota.list -destfile protein.actions.v11.0.change.txt -out Eukaryota.actions.v11.0.change.txt perl data_extract_by_ids.pl -idfile ../...
使用pfam进行基因家族鉴定【生物信息学】,基因家族分析 1.https://www.ebi.ac.uk/interpro/download/pfam/ 2.https://plants.ensembl.org/index.html 3.https://www.ebi.ac.uk/Tools/hmmer/search/hmmsearch 4.https://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi ID转换可使用工具gProfiler或者...
num_workers=1, port=51700, qcov=0, qtype='seq', report_no_hits=False, resume=False, scan_type='mem', score=None, servers_list=None, temp_dir='/mnt/lustre/scratch/nlsas/home/csic/eyg/xrv/genomas/eggnogmapper', timeout_load_server=10, trans_table=None, translate=False, usemem=Tru...
使用pfam进行基因家族鉴定【生物信息学】,基因家族分析 1.http://pfam.xfam.org/ 2.https://www.ebi.ac.uk/Tools/hmmer/search/hmmsearch 3.https://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi ID转换可使用工具gProfiler或者下面的链接http://bioinformatics.fafu.edu.cn/riceidtable/ hmmer离线使用...
seq_temp$hit.tbl$Larix_id <- seq_nam # collect the results into 'rsult' rsult <- rbind(rsult, seq_temp$hit.tbl) }, error = function(e) { cat("#---数据库不存在相应记录!\n") }) cat("#---", seq_nam, "---", i, "\n") ...
[-dbsize num_letters] [-gilist filename] [-seqidlist filename] [-negative_gilist filename] [-negative_seqidlist filename] [-taxids taxids] [-negative_taxids taxids] [-taxidlist filename] [-negative_taxidlist filename] [-ipglist filename] ...