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in the binding site were also calculated. The interactions between ligand and protein in the production simulations were computed by using the Getcontacts script tool (https://getcontacts.github.io/) (accessed on 25 March 2021). The MDAnalysis [30,31] python toolkit was used for distance ...
Therefore, we updated ChIA-PET Tool substantially, which included integrating the pipeline of processing short-read data and long-read data, rewriting the shell script of the processing pipeline with Java, revising the linker filtering with multithreading, adjusting the step of mapping to reduce ...
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