Fully Blind peptide-protein docking with pepATTRACT. Structure 23, 1507-1515 (2015).Schindler CE, de Vries SJ, Zacharias M. Fully Blind Peptide-Protein Docking with pepATTRACT. Struc- ture. 2015; 23: 1507-1515. doi: 10.1016/j.str.2015.05.021 PMID: 26146186...
In recent years, a variety of approaches have been developed for ‘protein–peptide docking’, that is, predicting the structure of the protein–peptide complex, starting from the protein structure and the peptide sequence, including variable degrees of information about the peptide binding site and...
1) peptide-protein docking method 生物多肽-蛋白质对接方法2) peptide and protein biochemistry 多肽与蛋白质生物化学3) protein polypeptides 蛋白质多肽 1. Analyses of peroxidase isozyme and protein polypeptides in female sterile Pinus tabulaeformis; 油松雌性不育系的POD同工酶和蛋白质多肽分析 更多例句...
FRODOCK: A new approach for fast rotational protein-protein docking Prediction of protein-protein complexes from the coordinates of their unbound components usually starts by generating many potential predictions from a rig... José Ignacio Garzonsup/sup, José Ramón Lopéz-Blancosup/sup, Carles Pons...
A. Docking by structural similarity at protein-protein interfaces. Proteins: Structure, Function, and Bioinformatics 78, 3235–3241 (2010). Article CAS Google Scholar Wallner, B. & Mirabello, C. Interpred: A pipeline to identify and model protein-protein interactions. Proteins: Structure, ...
because these structure-based docking methods were originally designed for binding pose prediction rather than virtual screening. Considering the above fact, we believe that CAMP can provide a more suitable and powerful tool than those structure-based docking methods on the virtual screening of peptide...
We set out to determine if docking peptides to peptide binding domains would assist in these predictions.First, we investigated the docking of known short peptides to their native and non-native peptide binding domains. We then investigated the docking of overlapping peptides adjacent to the ...
A flexible protein−peptide docking method has been designed to consider not only ligand flexibility but also the flexibility of the protein. The method is based on a Monte Carlo annealing process. Simulations with a distance root-mean-square (dRMS) virtual energy function revealed that the flexi...
Molecular-docking programs coupled with suitable scoring functions are now established and very useful tools enabling computational chemists to rapidly screen large chemical databases and thereby to identify promising candidate compounds for further experimental processing. In a broader scenario, predicting bind...
HPEPDOCK: a web server for blind peptide–protein docking based on a hierarchical algorithm Nucleic Acids Research(IF16.6)Pub Date : 2018-05-09, DOI:10.1093/nar/gky357 Pei Zhou1, Bowen Jin1, Hao Li1, Sheng-You Huang1 Affiliation