bachiraoun/pdbparser master 1 Branch0 Tags Code Folders and files Latest commit Bachir AOUNand Bachir AOUN bugs fixedNov 25, 2024 3cbde3e· Nov 25, 2024 History99 Commits AMD initial commit Mar 22, 2020 Analysis bugs fixed Mar 20, 2021 Data initial commit Mar 22, 2020 Examples removed ...
importBio.PDBasPDBl=PDB.PDBList()p=PDB.PDBParser()path=l.retrieve_pdb_file('3cmy',file_format='pdb',overwrite=True)structure=p.get_structure('3cmy',path) It might be worth updating to Biopython 1.76 just in case that fixed this (not my area of the code so I'm not sure immediately...
示例1 defparsepdb(self,lines):importPDBparserY=PDBparser.fast_PDBparser(lines,self.parse_terms)Y.parse()self.atoms=Y.atomsself.Update()self.attribute=Y.attributereturn 浏览完整代码来源:structure.py项目:yongwangCPH/peat 示例2 defreadpdb(self,filename,parse=1):## Reads a pdb file and lets ...
pdbParser cleans the PDB files and extracts the CA coordinates to be used with eBDIMs. Code can be run on local files, or with PDB codes to download files from the RCSB server. eBDIMS server can be accesed athttps://ebdims.biophysics.se/ ...
Bumps [fast-xml-parser](https://github.com/NaturalIntelligence/fast-xml-parser) from 4.2.7 to 4.3.2. - [Release notes](https://github.com/NaturalIntelligence/fast-xml-parser/releases) - [Changelog](https://github.com/NaturalIntelligence/fast-xml-parser/blob/master/CHANGELOG.md) - [Commits...
Sourced from@typescript-eslint/parser's releases. v7.16.1 7.16.1 (2024-07-15) 🩹 Fixes eslint-plugin:[no-unnecessary-type-parameters] descend into all parts of mapped types in no-unnecessary-type-parameters (#9530) ️ Thank You ...
dependabotbotcommented on behalf of Bumps@typescript-eslint/parserfrom 6.10.0 to 6.13.2. Release notes Sourced from@typescript-eslint/parser's releases. v6.13.2 6.13.2(2023-12-04) Note:Version bump only for package@typescript-eslint/typescript-eslint ...
pdbx is a parser module in python for structures of the protein data bank in the mmcif format - soedinglab/pdbx
Bumps @typescript-eslint/parser from 6.17.0 to 7.13.1. Release notes Sourced from @typescript-eslint/parser's releases. v7.13.1 7.13.1 (2024-06-17) 🩹 Fixes eslint-plugin: [prefer-readonly] refi...
Bumps [@typescript-eslint/parser](https://github.com/typescript-eslint/typescript-eslint/tree/HEAD/packages/parser) from 6.8.0 to 6.9.1. - [Release notes](https://github.com/typescript-eslint/typescript-eslint/releases) - [Changelog](https://github.com/typescript-eslint/typescript-es...