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binding residue extractionligand-protein interaction recognitionrule-based matching methodsequence label matchingCHEMISTRYGENEProteins typically exert their biological functions by interacting with other biomole-cules or ligands. The study of ligand-protein interactions is crucial in elucidating the biolo...
dna-translationdna-extractionpdb-structure UpdatedApr 13, 2022 Jupyter Notebook A script to generate a tripeptide database. At present, the amino acids of tripeptides produced are not complete pythonproteinpymolpdb-filesmodellerpdb-databasepdb-structure ...
TTclust is a python program used to clusterize molecular dynamics simulation trajectories. It only requires a trajectory and a topology file (compatible with most molecular dynamic packages such as Amber, Gromacs, Chramm, Namd or trajectory in PDB format thanks to the MDtraj package). Easy to us...
因为存储的是调试信息，所以一般情况下 PDB 文件是在 Debug 模式下才会生成。有了这个文件，我们才能对...
SecretEPDB provides detailed annotations for the three types of effector proteins, through manual extraction and integration using currently available databases or the literature from PubMed. Importantly, the database has been strictly curated to ensure that all effector protein entries in SecretEPDB are...
The PDB loader uses theDIA SDKto extract the information from the PDB. The extraction engine is based on the sample included in the DIA SDK. The project creator uses MSBuildConstruction Modelto create the .vcxproj file. Because PDB is an extension, it cannot use the internal APIs of ...
:: DESCRIPTION ExSerfacilitates an automated extraction of the amino acid sequence that encode for the secondary structural regions of a protein from the protein data bank (PDB) file. Advertisement ::DEVELOPER Dr. L. Arul (arulsra@gmail.com ) ...
How does the resolution of protein structures affect the extraction of correlations in PDBcor analysis? What is the significance of understanding correlated motion in protein ensemble structures? How does PDBcor utilize information theory to automate the extraction of residue-based protein correlations?
64-bit: x86-64, ARM64 (AArch64) Features: Static analysis of executable files with detailed information. Compiler and packer detection. Loading and instruction decoding. Signature-based removal of statically linked library code. Extraction and utilization of debugging information (DWARF, PDB). ...