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\t'+anno# print(ko)info=map_name+'\t'+map_l_1_name+'\t'+pathway_name+'\t'+ko ko_list.append(info)except:continuereturnko_listelse:print('Error: Json file does not exist.')defsave_data(self,result,file_name):# convert list to string for writing as fileforinfoinresult:kos=''....
B. Jassal, "Pathway annotation and analysis with Reactome: The solute carrier class of membrane transporters," Human Genomics, vol. 5, no. 4, pp. 310-315, 2011.B. Jassal, "Pathway annotation and analysis with Reactome: the solute carrier class of membrane transporters," Human genomics, vol...
Pathway enrichment analysis is the most common approach for understanding which biological processes are affected by altered gene activities under specific conditions. However, it has been challenging to find a method that efficiently avoids false positi
extended gapseq's pathway annotation Browse files - more gapseq reactions are mapped to metacyc pathways nowLoading branch information jotech committed Sep 20, 2024 1 parent 12a8e30 commit 1d0e874 Showing 1 changed file with 17,081 additions and 10,188 deletions. Whitespace Ignore whitespace...
Pathway annotation and analysis with Reactome: The solute carrier class of membrane transporters DOI: 10.1186/1479-7364-5-4-310 Bijay Jassal Keywords: solute transport, protein-ligand interaction, protein-protein interaction, pathway analysis, gene expression analysis Full-Text Cite this paper Add ...
Algal functional annotation tool The Algal Functional Annotation Tool is a web-based comprehensive analysis suite integrating annotation data from several pathway, ontology, and protein fa... Lopez,Casero,Cokus,... 被引量: 11发表: 2012年 Integrated analysis of differentially expressed genes in breast...
25 no. 8 2009, pages 1091–1093doi:10.1093/bioinformatics/btp101Systems biologyClueGO: a Cytoscape plug-in to decipher functionally groupedgene ontology and pathway annotation networksGabriela Bindea 1−4,† , Bernhard Mlecnik 1−3,† , Hubert Hackl 4 , Pornpimol Charoentong 4 ,Marie To...
UniPathway (http://www.unipathway.org) is a fully manually curated resource for the representation and annotation of metabolic pathways. UniPathway provides explicit representations of enzyme-catalyzed and spontaneous chemical reactions, as well as a hierarchical representation of metabolic pathways. This...
Pathway enrichment analysis has been widely used to identify cancer risk pathways, and contributes to elucidating the mechanism of tumorigenesis. However, most of the existing approaches use the outdated pathway information and neglect the complex gene interactions in pathway. Here, we first reviewed th...