KEGG pathway nameBp, GotermDavid, F A T
第一条正式的记录就是pathway, 其中给出了name, organ, number, title, image, link 等信息。 从上面的结构图也可以看出,在pathway 下面,位于同一层级的有 entry, reaction 和 relation 3种记录。 entry 用于记录该通路中最基本的组成元素,包括了gene, orthology, map, compound, group 等类型, 每个entry 用...
第一行用于声明这个文件是XML 格式,第二行声明xml 格式中字段定义对应的dtd 文件,第三行是注释信息,说明该文件创建的日期。第一条正式的记录就是pathway, 其中给出了name, organ, number, title, image, link 等信息。 从上面的结构图也可以看出,在pathway 下面,位于同一层级的有 entry, reaction 和 relation ...
pathway_name = "Apoptosis" #将wikipathways查询所得的某一通路中的节点导入 pathwaynodes = pd.read_csv(pathway_name+".txt",sep= '\t') uniprots =pathwaynodes["Identifier"].values.tolist() 根据uniprot ID查询库内包含的抗体 #连接数据库def mdb_conn(db_name): str = 'Driver={Microsoft Access ...
pr = pbubble + scale_colour_gradient(low="green",high="red") + labs(color=expression(-log[10](Qvalue)),size="Gene number",x="Rich factor",y="Pathway name",title="Top20 of pathway enrichment") pr + theme_bw() # 绘制pathway富集散点图 ...
ggraph(example1_network, layout = "manual", x = x, y = y) + geom_node_text(aes(label = name), hjust = 0.5) + geom_edge_link(aes(label = example1_edge_table$label), angle_calc = 'along', label_dodge = unit(2, 'lines'), arrow = arrow(length = unit(0.5, 'lines')),...
http://www.kegg.jp/kegg-bin/show_pathway?org_name=obr&mapno=00020&mapscale=&show_description=show pathway 通路图包含了非常多的信息,我们想要看懂一张通路图,必须理解图中的元素都代表什么东西。在通路图中,官方提供的图例如下: 结合hsa00020来理解一下,在一张通路图中,有三种基本对象: ...
Names function as sensory representations, but the relationship between names and sensory stimuli/responses remains unclear. This study proposes the existence of a class of stimulus-response pathways, the name pathway, where a name is a reproducible and communicable symbol and the name pathway is one...
--NODE_NAME NODE_ID NODE_TYPE PARENT_ID POSX POSY-- PTEN PTEN GENE -1 444 46 PIK3CA PIK3CA GENE -1 360 139 ... --EDGE_ID SOURCE TARGET EDGE_TYPE PTEN-PIK3CA PTEN PIK3CA INHIBITS ... Here the first line contains the pathway title followed by a single empty line. Then comes a ...
Gene SymbolFull Name ADCY3adenylate cyclase 3 ADRBK2adrenergic, beta, receptor kinase 2 ARRB2arrestin, beta 2 CALM1calmodulin 1 (phosphorylase kinase, delta) CALM2calmodulin 2 (phosphorylase kinase, delta) CALM3calmodulin 3 (phosphorylase kinase, delta) ...