Results: The tandem mass tag-based (TMT) sequencing analysis showed 224 upregulated and 140 downregulated proteins after infection with the AE17 strain. Based on the results of KEGG in Complement and coagulation cascades, differential protein expression in the Protein export pathway was upregulated....
Gene ontology category, KEGG pathway, and gene interaction networks (STRING analysis) were analyzed to identify relationships among differentially expressed genes. In general, the numbers of up-regulated genes were higher than of down-regulated genes. In the co-infection group, a more severe immune...
3B. These results indicated that the DE genes might play a crucial role in chicken against APEC infection. Fig. 3 GO and KEGG pathway analyses of the differentially expressed (DE) genes in avian pathogenic E. coli infected macrophages (APEC) vs. non-infected macrophages (Control). A GO ...
The virus BbCV2 distribution in insect bodies following host fungi infection was also determined by immunofluorescence assay. The results showed that after infection with the virus-infectedB. bassianastrain, at 488 nm and 495 nm, hyphae ofB. bassianaand virions were clearly observed. Furthermore, ...
Darcan C, Ozkanca R, Idil O, Flint KP. Viable but non-culturable state (VBNC) ofEscherichia colirelated toEnvZunder the effect of pH, starvation and osmotic stress in sea water. 2009. Goode O, Smith A, Zarkan A, Cama J, Invergo BM, Belgami D et al (2021) PersisterEscherichia coli...
genome content provided information about the specific genes involved in the mechanism of flagellar formation that allowsW. magnato move in the aquatic environment (Supplementary Table1). The comparison of protein sequences with the KEGG database (http://www.kegg.jp/kegg/kegg1.html.) reported 4...
hydrophilagenomes, the alignment coverage was then summarized inTable 3when the sequences shared more than 80% identity. In addition, theA. hydrophilagenomes were submitted to the KEGG pathway database (updated Oct. 2, 2014;http://www.genome.jp/kegg/pathway.html) to analyze the metabolic ...
No study employing whole-genome and transcriptomic sequencing during infection has been reported for R. cerealis. The objective of this study was to elucidate the evolution and pathogenic mechanisms of the wheat sharp eyespot pathogen R. cerealis. In order to achieve this, we complete the first ...
. It has been shown that colonization of enteropathogenicE. coliis tightly linked to the utilization of simple sugars and small organic acids from degraded mucus or dietary fibers6. Consequently, it is important that they rapidly adjust their carbon metabolism to successfully establish the infection...
proteins (COG), Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), UniProt/Swiss-Prot, protein families (Pfam), Carbohydrate-Active enZymes (CAZy), Pathogen-Host Interactions (PHI), Virulence Factors of Pathogenic Bacteria (VFDB) and Comprehensive Antibiotic Resistance Database (...