The gene ontology associated with the ndnDGN was acquired through a MATLAB script from the Gene Ontology Biological Process category and stored in the ndnONT table. Similarly, the phenotype associated with the disease genes was also obtained from published literature and from OMIM through NCBI; the...
These advantages, in addition to being open-source, make MatchMiner a viable option for adoption at other institutions nationwide. While MatchMiner has been successfully established as a trial matching tool throughout DFCI, we are also focused on continuing to grow the platform. Integrating all of...
opengene: Open source tools for NGS data analysis. MultiQC: Aggregate results from bioinformatics analyses across many samples into a single report. Gatk: GATK4 aims to bring together well-established tools from the GATK and Picard codebases under a streamlined framework, and to enable selected too...
We created an Application Programming Interface for SPLs using Scala, which will run on any imple-mentation of the Java Virtual Machine (JVM) and is freely available through an open-source license for any non-commercial use. 展开 被引量: 3 ...
The open-source federated learning used the stratified Cox regression model, with the centres as the stratification variable. This model prevents potential data leakage when the model is iteratively fitted to the local data across the three centres [10]. A stratified Cox regression utilises strata-...
open source framework that offers an end-to-end solution for producing, sharing, and visualizing quantum chemical data interactively on the web using an array of modern tools and approaches. These tools build on some of the best open source community projects such as Jupyter for interactive ...
open source framework that offers an end-to-end solution for producing, sharing, and visualizing quantum chemical data interactively on the web using an array of modern tools and approaches. These tools build on some of the best open source community projects such as Jupyter for interactive ...
BasicDTUController - The scope of this project is to provide an open-source open-access controller that can be used by the wind energy community as a reference. WindEnergyToolbox - Is a collection of Python scripts that facilitate working with (potentially a lot) of HAWC2,HAWCStab2, FAST ...
(Fig.1), as well as mosquito endectocide activity. The MMV, in partnership with the Drugs for Neglected Disease Initiative, assembled the PRB as a collection of 400 drug-like compounds stratified by antibacterial, antiviral or antifungal activity (201, 153, and 46 compounds, respectively), ...
Repository files navigation README Apache-2.0 license OnToma is a Python module which maps the disease or phenotype terms to EFO, the ontology used in the Open Targets platform. The documentation is available at https://ontoma.readthedocs.io/.About...