常见的ORF预测工具 Open Reading Frame Finder - NCBI ORF Finder - SMS OrfPredictor - YSU 基本概念 开放阅读框(英语:Open reading frame;缩写:ORF;其他译名:开放阅读框架、开放读架等)是指在给定的阅读框架中,
- NCBI - SMS - YSU 基本概念 开放阅读框（英语：Open reading frame；缩写：ORF；其他译名：开放阅读框架、开放读架等）是指在给定的阅读框架中，不包含终⽌密码⼦的⼀串序列。这段序列是⽣物个体的基因组中，可能作为蛋⽩质编码序列的部分。基因中的ORF包含并位于开始编码与终⽌编码之间。由于⼀段...
Sequence analysis. We predicted the amino acid sequences using the Open Reading Frame (ORF) Finder tool of NCBI (https://www.ncbi.nlm.nih.gov/orffinder/). Alignments of nucleotide and translated protein sequences were performed with http://nadv.herok...
Open Reading Frames (ORFs) were predicted using Open Reading Frame Finder [https://www.ncbi.nlm.nih.gov/gorf/gorf.html]. The tRNA genes were searched using tRNAscan-SE24. The annotated genes were also checked with the plant mitochondrial genome annotation program Mitofy25. All predicted ORFs...
Structural Characterization of Open Reading Frame-Encoded Functional Genes from Tilapia Lake Virus (TiLV)TiLVORF finderPhylogenetic analysisMolecular dynamics simulationTissue tropismIn recent years, large-scale mortalities are observed in tilapia due to infection with a novel orthomyxo-like virus named, ...
Upstream open reading frames (uORFs) can down-regulate the translation of the main open reading frame (mORF) through two broad mechanisms: ribosomal stalling and reducing reinitiation efficiency. In distantly related plants, such as rice and Arabidopsis, it has been found that conserved uORFs are...
Sequence analysis. We predicted the amino acid sequences using the Open Reading Frame (ORF) Finder tool of NCBI (https://www.ncbi.nlm.nih.gov/orffinder/). Alignments of nucleotide and translated protein sequences were performed with http://nadv.herok...
(version 3.0.0,https://github.com/TransDecoder) to find potential open reading frames and to predict protein sequences. We used BLASTP [82] (ncbi-blast-2.3.0+, parameters -max_target_seqs 1 -evalue 1e-05) to compare potential protein sequences with a trusted set of reference proteins ...
So the complete reading frame for recombinase A was annotated. Thus, the original BCG Russia sub-strain is not a recA mutant and the stability of the BCG Russia genome cannot be associated with recA inactivation. Keller et al. findings may indicate that the sub-strain used by authors was ...
It contains an open reading frame (ORF) corresponding to a truncated protein of 181 aa (vs 245 aa) with an unique C-terminus lacking the primary proteolytic segment (28 aa) right after the D175G site which is necessary to produce ‘soluble’ form of SCF. This alternative splice (AS) ...