When including the 114 unassigned sequences, the total number of 470 discovered CNVRs (62.1 Mb) corresponds to 2.13% of the cattle genome. We inferred 314 sequence losses, 112 gains, and 44 cases of combined losses and gains within the same CNVR (table 1 and supp...
Finally, the algorithm pre-computed the 16S GCN value of every Node by taking the mean of its sub-Nodes. When a query is given, the algorithm will search the hierarchical tree for the lowest taxon of the query lineage. If a query has an unassigned taxon, it assigns the value of the ...
Since chrUn only contains unassigned sequence contigs, it was not included due to the lack of sequence and SNPs as well as the SNP mapping uncertainty. Within the placed autosomes, a total of 3,666 CNVs in 521 samples were detected and an average of 7.09 gain or loss events were evident ...
target set to 3x10 6 . the 12 most intense parent ions excluding singly charged ions and ions with unassigned charges were selected for higer-energy collisional dissociation (hcd) fragmentation with a normalized collision energy (nce) set to 28%. the ms/ms spectra were analyzed in the ...
Entire or partial duplication of some genes like POPDC3 may have great economic importance in poultry breeding. Conclusions Our results based on extensive genetic diversity provide a more refined chicken CNV map and genome-wide gene copy number estimates, and warrant future CNV association studies ...