When including the 114 unassigned sequences, the total number of 470 discovered CNVRs (62.1 Mb) corresponds to 2.13% of the cattle genome. We inferred 314 sequence losses, 112 gains, and 44 cases of combined losses and gains within the same CNVR (table 1 and supp...
target set to 3x10 6 . the 12 most intense parent ions excluding singly charged ions and ions with unassigned charges were selected for higer-energy collisional dissociation (hcd) fragmentation with a normalized collision energy (nce) set to 28%. the ms/ms spectra were analyzed in the ...
Entire or partial duplication of some genes like POPDC3 may have great economic importance in poultry breeding. Conclusions Our results based on extensive genetic diversity provide a more refined chicken CNV map and genome-wide gene copy number estimates, and warrant future CNV association studies ...
Since chrUn only contains unassigned sequence contigs, it was not included due to the lack of sequence and SNPs as well as the SNP mapping uncertainty. Within the placed autosomes, a total of 3,666 CNVs in 521 samples were detected and an average of 7.09 gain or loss events were evident ...
the three unassigned markers, two of which are linked, are expected to segregate indeed independently, and therefore to lie on the two remaining chromosomes 8A and 10. Hence, we expect our markers to cover the complete set of 13 chromosome pairs. Of these, only LG2shows some sex linkage in...