Not a valid path value type: java.util.ArrayList ([/sfs/9/ws/qeajl01-smrnaseq_test/data/smrnaseq_trimmed_reads/QBCOS019AT_trimmed.fastq.gz]) However, if I remove the parameter--skip_fastpand add the following parameters instead: --trim_fastq false \ --clip_r1 0 \ --three_prime_c...
capsule.local=<value> - Sets the path of the local Maven repository to use. Unable to initialize nextflow environment A 'nextflow' file is created, but when trying to run it (afterchmod +x nextflow) the same error as above is thrown. after runningexport JAVA_HOME=$(/usr/libexec/java_h...
nextflow_config - Config default value correct: params.simpleaf_rlen= 91 nextflow_config - Config default value correct: params.star_feature= Gene nextflow_config - Config default value correct: params.kb_workflow= standard nextflow_config - Config default value correct: params.custom_config_version...
nextflow_config - Config trace.enabled had correct value: true nextflow_config - Config dag.enabled had correct value: true nextflow_config - Config manifest.name began with nf-core/ nextflow_config - Config variable manifest.homePage began with https://github.com/nf-core/ nextflow_config - Con...