not+a+valid+path+value+nextflow

2025-01-06 15:44:43

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nextflow works with java v17 but not v18 · Issue #2856...

$NXF_VER =~ ([0-9]+)\.([0-9]+)\.([0-9].*) ]]; then echo_red "Not a valid Nextflow version: $NXF_VER" if [[ ! $JAVA_VER =~ $version_check ]]; then if [[ ! $JAVA_VER =~ ^(11|12|13|14|15|16|17|18) ]]; then echo_yellow "NOTE: Nextflow is not tested ...
Snapshot all files (content or file name when not stable) by...

nextflow_config - nextflow.config contains configuration profile test nextflow_config - Config default value correct: params.hisat2_build_memory= 200.GB nextflow_config - Config default value correct: params.gtf_extra_attributes= gene_name nextflow_config - Config default value correct: params.gtf_g...
[Do not merge!] Pseudo PR for first release by mashehu...

nextflow_config - Config default value correct: params.max_multiqc_email_size= 25.MB nextflow_config - Config default value correct: params.validate_params= true nextflow_config - Config default value correct: params.pipelines_testdata_base_path= https://raw.githubusercontent.com/nf-core/test-da...
Remove `params.save_merged` as merged reads are not used in...

nextflow run . -profile test,docker --outdir <OUTDIR> PR Description This PR removes the params.save_merged option from the pipeline. The parameter was previously used to save merged reads, but these reads are not utilized in any downstream analysis, making the parameter redundant nf-core lin...