Finally, the common crosstalk genes between AS and NASH were determined by intersecting the crosstalk genes of NASH with AS, ensuring that the genes expressed in the same direction (either upregulated or downregulated). Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) ...
Annotation of lncRNA genes and comparisons with other plant lncRNA databases. (a) Distribution of the 6764 lncRNA genes predicted by the SM. (b) Venn diagram comparing the SM (green) with the databases GreeNC (purple), CANTATAdb (pink) and Araport11(yellow) where the lncRNAs have been ann...
intersecting the crosstalk genes of NASH with AS, ensuring that the genes expressed in the same direction (either upregulated or downregulated). Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis The common crosstalk genes were imported into the David database...
using a lollipop diagram. The study utilised the RF algorithm founded on recursive feature elimination, with the training model employed to ascertain the significance of variables. The RF model was initially used to train a subset of 20 variables, evaluate their importance, and assess the model’s...
This was achieved by intersecting the SNP coordinates with the non-promoter end of the looping region. If there was a match, the promoter end of the coordinates was called by the gene name. This analysis was accomplished using a custom python script. KOBS study cohort A subset of 263 ...
(n = 3 per group).dThe Venn diagram of transcriptome and quantitative inflammation microarray analysis. The intersecting signaling pathways were listed in the table in Fig.4e.f-hThe mRNA levels ofTLR4, MyD88, andCaspase-11of murine lung tissue in four groups (PBS + Vehicle, PBS...
However, the evaluation of sex-based differences in lung adenocarcinoma patients provided a small number of significantly affected genes (see Supplementary Table S3), with no intersecting genes. We performed an individual functional enrichment analysis of Gene Ontology (GO) terms and Kyoto Encyclopedia...
Intersecting the aforementioned methods allowed determination of the set of 1040 potentially non-coding transcripts (Venn diagram, Figure 1). The remaining transcripts were devoid of non-mRNA sequences, and as a result, 990 variants, corresponding to 607 regions, were classified as predicted lncRNAs...