1.Docker-Hub拉取镜像及运行容器 进入Docker中根据自己所需选取镜像,这里我选取的是pytorch/pytorch:2.2.2-cuda11.8-cudnn8-runtimeme 搜索自己所需的镜像 进入Ubuntu子系统,执行如下代码 docker pull pytorch/pytorch:2.2.2-cuda11.8-cudnn8-runtimeme docker run -it --gpus "device=0" pytorch/pytorch:2.2....
# docker container run --rm -v "$PWD/run_build.sh:/home/run_build.sh" -p 8888:5000 --name test hello_world:v2 /bin/bash -c "cd /home/ && /bin/sh run_build.sh && python -u app.py -p 5000" docker container run --rm -v "$PWD/:/home/" -p 8888:5000 --name test hell...
⭐ 开始预处理,命令nnUNetv2_plan_and_preprocess -d DATASET_ID --verify_dataset_integrity(有了前两天的准备,第三天显得从容了一些,但问题也是层出不穷。先是一直报没有nnunetv2这个包的错误,各种分析、各种查资料、各种试错,依然没有解决,索性破釜沉舟,直接从创建环境开始推倒重来;然后重建环境的时候又一次...
dockerwrappernnunet UpdatedJan 14, 2025 Python rachitsaluja/UCSF-BMSR-benchmarks Star4 nnUNet benchmarks for The University of California San Francisco Brain Metastases Stereotactic Radiosurgery (UCSF-BMSR) dataset. datadeep-learningbenchmarkssegmentationbrainsegmentation-modelsnnunet ...
nnUNetv2_ensemble -i OUTPUT1 OUTPUT2 -o OUTPUT_ENSEMBLE Note that our inference Docker omitted TTA via mirroring along the axial direction during prediction (only sagittal + coronal mirroring). This was done to keep the inference time below 10 minutes per image on a T4 GPU (we actually neve...
使用带有 cuda 环境的 docker 容器,需要安装nvidia-docker组件。 sudo apt-getinstall curl curl-fsSLget.docker.com-oget-docker.sh sudo shget-docker.sh--mirror Aliyun sudo systemctl enable docker sudo systemctl start docker sudo usermod-aG docker $USERdistribution=$(./etc/os-release;echo $ID$VE...
CUDA_VISIBLE_DEVICES=0,1,2... nnUNet_train_DP CONFIGURATION nnUNetTrainerV2_DP TASK_NAME_OR_ID FOLD -gpus GPUS --dbs Note that nnUNetTrainerV2 was replaced with nnUNetTrainerV2_DP. Just like before, CONFIGURATION can be 2d, 3d_lowres or 3d_fullres. TASK_NAME_OR_ID refers to the ...
Hi Fabian, When I ran nnUNet_train 3d_fullres nnUNetTrainerV2 2 0 something went wrong ### loading dataset loading all case properties unpacking dataset done 2020-12-03 20:01:59.975011: lr: 0.01 using pin_memory on device 0 using pin_memory on device 0 Exception...
MOOSEv2_data/ 📁 ├── S1 📂 │ ├── AC-CT 📂 │ │ ├── WBACCTiDose2_2001_CT001.dcm 📄 │ │ ├── WBACCTiDose2_2001_CT002.dcm 📄 │ │ ├── ... 🗂️ │ │ └── WBACCTiDose2_2001_CT532.dcm 📄 ...
josegcpa / nnunet_docker Star 5 Code Issues Pull requests Utilities to run nnUNet more easily using containers docker wrapper nnunet Updated Jan 14, 2025 Python szuboy / paddle-nnUNet Star 5 Code Issues Pull requests nnUNet paddlepaddle version deep-learning medical segmentation ...