NLR-annotator代码 time java -jar ~/biotools/software.package/NLR-Annotator-NLR-Annotator-2/NLR-Annotator-v2.1b.jar \ -i input.genome.fa \ -x ~/biotools/software.package/NLR-Annotator-NLR-Annotator-2/mot.txt \ -y ~/biotools/software.package/NLR-Annotator-NLR-Annotator-2/store.txt \ -o ...
NLR-Annotator Introduction NLR-Annotator is a tool to annotate loci associated with NLRs in large sequences. It is searching for amino acid motifs within all 6 frames of a nucleotide sequence. An NLR locus is defined from first to last motif that can be associated with an NLR. It does NOT...
NLR 基因使用 NLR-Annotator进行注释。使用 RNeasy Plant Mini Kit从每个关键重组体幼苗的混合茎组织中提取 RNA 样品,并用 RNase DNase Set处理以去除 DNA。使用 sra-toolkit v2.11.0收集和提取公共 RNA-seq 数据。使用 STAR v2.7.9a将 RNA-seq 数据映射到供体系的基因组并根据映射到每个 NLR 基因的读取数计...
Files main ChopSequence.jar NLR-Annotator.jar NLR-Parser3.jar README.md meme.xml src.zipBreadcrumbs NLR-Annotator / NLR-Parser3.jar Latest commit Wulff-Lab Add files via upload 4759f0b· Oct 2, 2020 HistoryHistory File metadata and controls Code Blame 49.3 KB Raw View raw...
NLR 基因使用 NLR-Annotator进行注释。使用 RNeasy Plant Mini Kit从每个关键重组体幼苗的混合茎组织中提取 RNA 样品,并用 RNase DNase Set处理以去除 DNA。使用 sra-toolkit v2.11.0收集和提取公共 RNA-seq 数据。使用 STAR v2.7.9a将 RNA-seq 数据映射到供体系的基因组并根据映射到每个 NLR 基因的读取数计...
一、NLR-Annotator下载及环境部署 NLR-Annotator 是Steuernagel利用JAVA开发用以从基因组DNA序列上直接鉴定NLR loci的工具,相关成果发表在Plant physiology上The NLR-Annotator Tool Enables Annotation of the Intracellular Immune Receptor Repertoire - PubMed (nih.gov) ...
java-Xmx8G-jar~/soft/NLR-Annotator/NLR-Annotator-v2.1b.jar-i nense.genome.chr.fa-x~/soft/NLR-Annotator/mot.txt-y~/soft/NLR-Annotator/store.txt-o nense.txt-t24 参数说明: -i 是基因组文件 mot.txt 这是作者提供的文件 store.txt 这是作者提供的文件 ...
Nucleotide-binding leucine-rich repeat (NLR) disease resistance genes typically confer resistance against races of a single pathogen. Here, we report thatYr87/Lr85, an NLR gene fromAegilops sharonensisandAegilops longissima, confers resistance against bothP. striiformis tritici(Pst) andPuccinia triticina...
Files main ChopSequence.jar NLR-Annotator.jar NLR-Parser3.jar README.md meme.xml src.zipBreadcrumbs NLR-Annotator / ChopSequence.jar Latest commit Wulff-Lab Add files via upload 4759f0b· Oct 2, 2020 HistoryHistory File metadata and controls Code Blame 140 KB Raw View raw...
The NLR-Annotator Tool Enables Annotation of the Intracellular Immune Receptor Repertoire(1)([OPEN]) Plant genomes typically contain hundreds of NLR-encoding genes. The availability of the hexaploid wheat (Triticum aestivum) cultivar Chinese Spring reference genome allows a detailed study of its NLR ...